View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3023-Insertion-5 (Length: 597)
Name: NF3023-Insertion-5
Description: NF3023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3023-Insertion-5 |
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Alignment Details
Target: chr6 (Bit Score: 516; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 8 - 589
Target Start/End: Original strand, 3637000 - 3637584
Alignment:
| Q |
8 |
agtatatgaacagtttgatttagtcatcgactccttaaaacttttctcaaaatttgttctcctatgaatgtcacttaatcaacattgtggatggtgatga |
107 |
Q |
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| T |
3637000 |
agtatatgaacattttgatttagtcatcgactccttaaaacttttctcaaaatttgttctcctatgaatgtcacttaatcaacattgtggatggtgatga |
3637099 |
T |
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| Q |
108 |
tgcacgtctccattcagtataatgttggcaattatatagtacaacattcaaaggtttaaaaatatttttcacaaataccttttttgttataacaaaaaag |
207 |
Q |
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| T |
3637100 |
tgcacgtctccattcagtataatgttggcaattatatagtacaacattcaaaggtttaaaaatatttttcacaaataccttttttgttataacaaaaaag |
3637199 |
T |
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| Q |
208 |
tatcaaattgatcactgttgttattttttacaaaaatgaaatgagagatgaagatggaacaacatttacattt-caccactttaaaataagtgacgatga |
306 |
Q |
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| T |
3637200 |
tatcaaattgatcactgttgttatttttcacaaaaatgaaatcagagatgaagatggaacaacatgtacatttccaccactttaaaataagtgacgatga |
3637299 |
T |
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| Q |
307 |
acaattgttttattcacagtacacaaacatcataagaagataaaagtgttctacaatgagaagaaaagacacgcaagagtaaggacacataattgctctt |
406 |
Q |
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| T |
3637300 |
acaattgttttattcacagtacacaaacatcataagaagataaaagtgttctacaataagaagaaaagacacgcaa-agtaaggacacataattgctctt |
3637398 |
T |
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| Q |
407 |
tgtatattatagtttcaaatattttgtattctttcctccatgactaggacaaccaataatccacatcaacgcttagtaacagaattttacataaggatga |
506 |
Q |
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| T |
3637399 |
tgtgtattatagtttcaaatattttgtattctttcctccatgactaggacaaccaataatccacatcaacgcttagtaacagaattttacataaggatga |
3637498 |
T |
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| Q |
507 |
atttgagaaacgttttatagagtcgaagtctgaatta---agatatatatattctcgagaatcaaattgagaatttgccacaaagt |
589 |
Q |
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| T |
3637499 |
atttgagaaacgttttatagagtcgaagtctgaattatagatatatatatattctcgagaaccaaattgagaatttgttacaaagt |
3637584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 492 - 532
Target Start/End: Original strand, 36922529 - 36922569
Alignment:
| Q |
492 |
tttacataaggatgaatttgagaaacgttttatagagtcga |
532 |
Q |
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| T |
36922529 |
tttaaataaggatgattttgagaaacattttatagagtcga |
36922569 |
T |
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