View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3023-Insertion-6 (Length: 554)
Name: NF3023-Insertion-6
Description: NF3023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3023-Insertion-6 |
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| [»] chr6 (2 HSPs) |
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| [»] scaffold0110 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 539; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 539; E-Value: 0
Query Start/End: Original strand, 8 - 554
Target Start/End: Original strand, 24898485 - 24899031
Alignment:
| Q |
8 |
aaactcctccgtgaaatgctttctagaggtctactgtaagagtaaaactagtgagttgttttctagttacaatctgttattctgaatttgaaataacaaa |
107 |
Q |
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| T |
24898485 |
aaactcctccgtgaaatgctttctagaggtctactgtaagagtaaaactagtgagttgttttctagttacaatctgttattctgaatttgaaataacaaa |
24898584 |
T |
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| Q |
108 |
ttgttagtctatgacacataaaaaggaaattggactaaacatagttttggtaaaaaacagttgctgtaaggttcatactgatgtgttaataatagttgaa |
207 |
Q |
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| T |
24898585 |
ttgttagtctatgacacataaaaaggaaattggactaaacatagttttggtaaaaaacagctgctgtaaggttcatactgatgtgttaataatagttgaa |
24898684 |
T |
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| Q |
208 |
aatatgatttgttatcttgtttcgacatcttgtagctgggacagttacttttatagtcagataaaaaccatgtatagaataatgataactctggatttga |
307 |
Q |
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| T |
24898685 |
aatatgatttgttatcttgtttcgacatcttgtagctgggacagttacttttatagtcagataaaaaccatgtatagaataatgataactctggatttga |
24898784 |
T |
|
| Q |
308 |
attgagttatttttccctatgcttgctgtaaagatcatcatgacatcttcatgatttctttttcattgcagaatttgttattatgatgccttcaaatcaa |
407 |
Q |
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| T |
24898785 |
attgagttatttttccctatgcttgctgtaaagatcatcatgacatcttcatgatttctttttcattgcagaatttgttattatgatgccttcaaatcaa |
24898884 |
T |
|
| Q |
408 |
acaacatcattgtttgcacattcttgattctgattcgtgcaaatgtaaagttcgctcagtgttattattatagcttcaatgtgattgtccacatcctccc |
507 |
Q |
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| T |
24898885 |
acaacatcattgtttgcacactcttgattctgattcgtgcaaatgtaaagttcgctcagtgttattattatagcttcaatgtgattgtccacatcctccc |
24898984 |
T |
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| Q |
508 |
cgtatacaattgatgcttctcactgtagtgctccataattcctgacc |
554 |
Q |
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| T |
24898985 |
cgtatacaattgatgcttctcactgtagtgctccataattcctgacc |
24899031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 88
Target Start/End: Original strand, 30149944 - 30150017
Alignment:
| Q |
17 |
cgtgaaatgctttctagaggtctactgt-aagagtaaaacta-gtgagttgttttctagttacaatctgttatt |
88 |
Q |
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| T |
30149944 |
cgtgaaatgattgctagaggtctactctaaagagtaaaactaggtaagatgttttctaggtacaatttgttatt |
30150017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0110 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0110
Description:
Target: scaffold0110; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 17 - 96
Target Start/End: Complemental strand, 43451 - 43370
Alignment:
| Q |
17 |
cgtgaaatgctttctagaggtctactgt-aagagtaaaacta-gtgagttgttttctagttacaatctgttattctgaattt |
96 |
Q |
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| T |
43451 |
cgtgaaatgattgctagaggtctactctaaagagtaaaactaggtaagatgttttctacttacaatttgttattatgaattt |
43370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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