View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3023-Insertion-7 (Length: 552)

Name: NF3023-Insertion-7
Description: NF3023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3023-Insertion-7
NF3023-Insertion-7
[»] chr5 (1 HSPs)
chr5 (8-552)||(7842004-7842561)


Alignment Details
Target: chr5 (Bit Score: 438; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 8 - 552
Target Start/End: Original strand, 7842004 - 7842561
Alignment:
Q  8 atctttgacattttgagccatatttgaagccttatctgaagctatgtttagtttttgcttagcatcctcataggtttcagtcactttttctgttggcatt 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7842004 atctttgacattttgagccatatttgaagccttatctgaagctatgtttagtttttgcttagcatcctcataggtttcagtcactttttctgttggcatt 7842103  T
Q  108 ctgatgttttcagcacctccaattcgactataagactccgatgttttttcccttccgtgtgacatggctcctgaaattgcttccttggtatctctagcct 207  Q
    |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  7842104 ctgatgttttcatcacctccaattcgattataagactccgatgttttttcccttccgtatgaaatggctcctgaaattgcttccttggtatctctagcct 7842203  T
Q  208 tctgcaaagcatactcagaagctcctatacatacaaacaaattaaagcaattgcattacttgagttagatacaaaatcattctctaaatgannnnnnnct 307  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||    
T  7842204 tctgcgaagcatactcagaagctcctatacatacaaacaaattaaagcaattgcattacttgagttagatacaaaatcattctctaaatgatttttttct 7842303  T
Q  308 tctctaatgcatgagagcaagtgaaagaaacttttt-------ct-------aaataggcttgaagtgagtgttgaatacacttcaaaattttctaaagt 393  Q
    ||||||||||||||||||||||||||||||||||||       ||       ||||||||||||||||||||||||||||||||||||| ||||| |||     
T  7842304 tctctaatgcatgagagcaagtgaaagaaacttttttcggttactttcaaaaaaataggcttgaagtgagtgttgaatacacttcaaaa-tttcttaagc 7842402  T
Q  394 atcctaaagggggttcatccttcttcccacttgcatccaatattcatagatcggtagggagaattgaacctacaacttggtgtgacacactgacacacat 493  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  7842403 atcctaaaggggattcatccttcttcccacttgcatccaatattcatagattggtagggagaattgaacctacaacttggtgtgacacactgacacacat 7842502  T
Q  494 gccttggaattcattagtgcaatcgacattatcatcttctttgttcaagtgttgcatca 552  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  7842503 gccttggaattcattggtgcaatcgacattatcatcttctttgttcaagtgttgcatca 7842561  T

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