View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3023-Insertion-8 (Length: 554)
Name: NF3023-Insertion-8
Description: NF3023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3023-Insertion-8 |
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Alignment Details
Target: chr2 (Bit Score: 516; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 7 - 548
Target Start/End: Complemental strand, 42412702 - 42412159
Alignment:
| Q |
7 |
aggctcaagctaacaatttgaagggtcatttgccagtgaatttggtgactttcacaaacttgactataataaatttatcaaacaatcaattacatggtcc |
106 |
Q |
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| T |
42412702 |
aggctcaagctaacaatttgaagggtcatttgccagtgaatttggtgactttcacaaacttgactataataaatttatcaaacaatcaattacatggtcc |
42412603 |
T |
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| Q |
107 |
tattccaaaagagtatggattaaaactaagaacaacatggagaagattgtatttggatcacaactttcttacgggaaatcttccattggagttaactcac |
206 |
Q |
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| T |
42412602 |
tattccaaaagagtatggattaaaactaagaacaacatggagaagattgtatttggatcacaactttcttacaggaaatcttccattggagttaactcac |
42412503 |
T |
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| Q |
207 |
aaatccacaaatttcaaaggaagctttgcaaacaactgtctcaattgcccaacaaatgttggtgtttgccgtggagggcaaagaccagcaacagaatgta |
306 |
Q |
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| T |
42412502 |
aaatccacaaatttcaaaggaagctttgcaaacaactgtctcaattgcccaacaaatgttggtgtttgccgtggagggcaaagaccagcaacagaatgta |
42412403 |
T |
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| Q |
307 |
ctgggcaacacaacctatgaaattggataa-aaaactctccaaag-aaacaatttctgaaatcaatcaactgcaataagaaagtggagttctagtttatt |
404 |
Q |
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| T |
42412402 |
ctgggcaacacaacctatgaaattggataaaaaaattctccaaagaaaacaatttctgaaatcaatcaactgcaataagaaagtggagttctagtttatt |
42412303 |
T |
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| Q |
405 |
tatttcaatggtgtgctaagtatattagttatattcaaataaaataattaattttgtgagaaatatatgtagttttattcttttgaaagaggtgatgtat |
504 |
Q |
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| T |
42412302 |
tatttcaatggtgtgctaagtatattagttatattcaaataaaataattaattttgtgagaaatatatgtagttttattcttttgaaagaggtgatgtat |
42412203 |
T |
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| Q |
505 |
tcattttaatttggcatgtttttaatatttatattacctgttga |
548 |
Q |
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| T |
42412202 |
tcattttaatttggcatgtttttaatatttatattatctgttga |
42412159 |
T |
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