View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3023R-Insertion-1 (Length: 868)
Name: NF3023R-Insertion-1
Description: NF3023R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3023R-Insertion-1 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 657; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 657; E-Value: 0
Query Start/End: Original strand, 9 - 868
Target Start/End: Original strand, 41070206 - 41071057
Alignment:
| Q |
9 |
atatttttatatttacgagtttacaagatttgcacaaaactatgtatattaccctcagatgtgtgatttaacccacaaaataagttaagagaccaaattt |
108 |
Q |
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| T |
41070206 |
atatttttatatttacgagtttacaagatttgcacaaaactatgtatattaccctcagatgtgtgatttaacccacaaaataagttaagagaccaaattt |
41070305 |
T |
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| Q |
109 |
ataatttaatctaaataaaaagagtgtaaaatgctggaaacattgacaaaattgttggaggggtatatgtcaaacatatacttcatctataaaacaa-tt |
207 |
Q |
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| T |
41070306 |
ataatttaatctaaataaaa-gagtgtaaaatgctggaaacattgaggaaattgttggaggggtatatgtcaaacatatacttcatctataaaacaaatt |
41070404 |
T |
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| Q |
208 |
acttagaatttatcaagctctcaacccaaccattatgggttgcatgggattatattttgatctctttatcaccttaaatgataaagagattcaacacttc |
307 |
Q |
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| T |
41070405 |
acttagaatttatcaagctctcaacccaaccattatgggttgcatgggattatattttgatctctttatcaccttaaatgataaagagattcaacacttc |
41070504 |
T |
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| Q |
308 |
taaccatcatgaaatacaggtcaatcagttcagtccattaggccaggccaaattcaacacctctaaccaataaatatacttgctcatgctcttgccagac |
407 |
Q |
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| T |
41070505 |
taaccatcatgaaatacaggtcaataagttcagtccattaggccaggccaaattcaacacctctaaccaataaatatacttgctcatgctcttgccagac |
41070604 |
T |
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| Q |
408 |
caactcacttgtgccccacgttagtttttgacatatacttcatctctttccccttatttccctcgtgtctaatgagtgaattatattggctatagatatt |
507 |
Q |
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| T |
41070605 |
caactcacttgtgccccacgttagtttttgacatatacttcatctctttccccttatttccctcctgtctaatgagtgaattatattggctatagatatt |
41070704 |
T |
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| Q |
508 |
agattgtgatccttagtttatgaaggagaccatttnnnnnnntattgggtgcgtgcgtttgttttaacnnnnnnncactttcgattaaaatatgaaaaat |
607 |
Q |
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| T |
41070705 |
agattgtgatccttagtttatgaaggagaccatttaaaaaaatattgggtgcgtgcgtttgttttaac-aaaaaacactttcgattaaaatatgaaaaat |
41070803 |
T |
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| Q |
608 |
gctaacaagtgtatttatgatannnnnnnaagcatctaaaattagcgacgtttgcattggaaattgtggagttataactttagcatgtgtttctaagaca |
707 |
Q |
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| T |
41070804 |
gttaacaagtgcatttataata-ttttttaagcattcaaaat------cgtttgcattggaaattgtggagttataactttaacatgtgtttctaagaca |
41070896 |
T |
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| Q |
708 |
aannnnnnnnaataggttccttgaacaatgcgcttaggacacttgttaccaaaacctttaaaatatttagacattttattttagagaatcgaaactaaaa |
807 |
Q |
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| T |
41070897 |
atttttttttaataggttccttaaacaatgcacttgggacacttgttagcaaaacctttaaaatatttagacattttattttagagaatcgaaactaaaa |
41070996 |
T |
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| Q |
808 |
ctagcacactcgaagtctcaagtcaacatcactaaaccaactcaactataaaattactaca |
868 |
Q |
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| T |
41070997 |
ctagcacactcgaagtctcaagtcaacatcactaaaccaactcaaatatagaattactaca |
41071057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 722 - 773
Target Start/End: Complemental strand, 13018500 - 13018449
Alignment:
| Q |
722 |
ggttccttgaacaatgcgcttaggacacttgttaccaaaacctttaaaatat |
773 |
Q |
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| T |
13018500 |
ggttccttaaacaatgcccttaggacacttgttaacaagacccttaaaatat |
13018449 |
T |
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