View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3023R-Insertion-14 (Length: 125)
Name: NF3023R-Insertion-14
Description: NF3023R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3023R-Insertion-14 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 86; Significance: 1e-41; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 86; E-Value: 1e-41
Query Start/End: Original strand, 9 - 125
Target Start/End: Complemental strand, 43227237 - 43227121
Alignment:
| Q |
9 |
cgaacaacctgttccttttaaaattattattaaggacaaaggggtttagagttattgtttgacattcaccnnnnnnnnntgaatattttgttaaggtttg |
108 |
Q |
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| T |
43227237 |
cgaacaacctgttccttttaaaattattattaaggacaaaggggtttagacttattgtttgacattcaccaataaaaaatgaatattttgttaaggtttg |
43227138 |
T |
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| Q |
109 |
ctttgatgtgattgttc |
125 |
Q |
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| T |
43227137 |
ctttgatgtgattgttc |
43227121 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 10 - 125
Target Start/End: Complemental strand, 43236744 - 43236631
Alignment:
| Q |
10 |
gaacaacctgttccttttaaaattattattaaggacaaaggggtttagagttattgtttgacattcaccnnnnnnnnntgaatattttgttaaggtttgc |
109 |
Q |
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| T |
43236744 |
gaacaacccgttccttttaaaattattattaaggacaaaagggtttagacttattg-ttgtcattca-caagaaaaaaagaatattttgttaaggtttgc |
43236647 |
T |
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| Q |
110 |
tttgatgtgattgttc |
125 |
Q |
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| T |
43236646 |
tttgatgtaattgttc |
43236631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 43244901 - 43244853
Alignment:
| Q |
19 |
gttccttttaaaattattattaaggacaaaggggtttagagttattgtt |
67 |
Q |
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| T |
43244901 |
gttccttttaaaattattattaaggacaaaaggttttagatttattgtt |
43244853 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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