View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3023R-Insertion-16 (Length: 207)
Name: NF3023R-Insertion-16
Description: NF3023R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3023R-Insertion-16 |
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Alignment Details
Target: chr4 (Bit Score: 162; Significance: 1e-86; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 9 - 206
Target Start/End: Original strand, 37752406 - 37752603
Alignment:
| Q |
9 |
cttttatggctccaacaccaatcatcaacgacgcaacggtgattagtccatcattggctcctaacatggctgctctaagccattgtgccctttgaaagta |
108 |
Q |
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| T |
37752406 |
cttttatagctccaacaccaatcatcaacgatgcaacggtgattagtccatcattggctcctaacatggctgctctaagccattgtgccctttgaaagta |
37752505 |
T |
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| Q |
109 |
atcaatgttgctggtctctttttcaattttgagagtactattagcatggatagggatctcaacctcaaaattgtttggtgaggttccattagtttttg |
206 |
Q |
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| T |
37752506 |
atcaatgttgttgctctctttttcaactttgagagaactattagcatggatagggatctcaacctcgaaattgtttggtgagcttccaatagtttttg |
37752603 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 9 - 190
Target Start/End: Complemental strand, 37742312 - 37742131
Alignment:
| Q |
9 |
cttttatggctccaacaccaatcatcaacgacgcaacggtgattagtccatcattggctcctaacatggctgctctaagccattgtgccctttgaaagta |
108 |
Q |
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| T |
37742312 |
cttttatagctccaacaccaatcatcaacgatgcaacggtgattagtccatcattggctcctaacatggctgctctaagccattgtgccctttgaaagta |
37742213 |
T |
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| Q |
109 |
atcaatgttgctggtctctttttcaattttgagagtactattagcatggatagggatctcaacctcaaaattgtttggtgag |
190 |
Q |
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| T |
37742212 |
atcaatgttgttgctctctttttcaactttgagagaactattagcatggatagggatctcaaccacgaaattgtttggtgag |
37742131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 9 - 190
Target Start/End: Complemental strand, 37749382 - 37749201
Alignment:
| Q |
9 |
cttttatggctccaacaccaatcatcaacgacgcaacggtgattagtccatcattggctcctaacatggctgctctaagccattgtgccctttgaaagta |
108 |
Q |
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||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37749382 |
cttttatagctccaacaccaatcatcaacgatgcaacggtgattagtccatcattggctcctaacatggctgctctaagccattgtgccctttgaaagta |
37749283 |
T |
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| Q |
109 |
atcaatgttgctggtctctttttcaattttgagagtactattagcatggatagggatctcaacctcaaaattgtttggtgag |
190 |
Q |
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| T |
37749282 |
atcaatgttgttgctctctttttcaactttgagagaactattagcatggatagggatctcaaccacgaaattgtttggtgag |
37749201 |
T |
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