View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3023R-Insertion-3 (Length: 757)
Name: NF3023R-Insertion-3
Description: NF3023R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3023R-Insertion-3 |
 | |
|
| [»] chr2 (6 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 653; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 653; E-Value: 0
Query Start/End: Original strand, 89 - 757
Target Start/End: Complemental strand, 4508348 - 4507680
Alignment:
| Q |
89 |
ttaagaacttacgacctgtttggattgacttatttgaacttatatattgacgcaagtaattatgagatcttaaaataatagattataccttatatgaaaa |
188 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4508348 |
ttaagaacttacgacctgtttggattgacttatttgaacttatatattgacgcaagtaattatgagatcttaaaataatagattataccttatatgaaaa |
4508249 |
T |
|
| Q |
189 |
cagtttgacgttattttgttttttatttatataataagagcttaattaagttgtttatccaaaaagggtgctagtgattgatctcttgcttcttgttggt |
288 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |
|
|
| T |
4508248 |
cagtttgacgttattttgttttttatttatataataagagcttaattaagttgtttatccaaatagggtgttagtgattgatctcttgcttcttgttggt |
4508149 |
T |
|
| Q |
289 |
tttcagctgaagatttaattactaaagagaaagttaaagtcattattggcatggaaacatggcaagaagctgctattgttgctgactttggagccaagtt |
388 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4508148 |
tttcagctgaagatttaattactaaagagaaagttaaagtcattattggcatggaaacatggcaagaagctgctattgttgctgactttggagccaagtt |
4508049 |
T |
|
| Q |
389 |
tcaaataccaacaatttcattttcttctcctccgttagtctcttcatcatcaatgcaatttcgttggcctttcttgattcaaatggctcaaaatcattct |
488 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4508048 |
tcaaataccaacaatttcattttcttctcctccgttagtctcttcatcatcaatgcaatttcgttggcctttcttgattcaaatggctcaaaatcattct |
4507949 |
T |
|
| Q |
489 |
gcacaaatgaacttcatagctgatattgtccatagtttcaactctcaaaaagttatagctatatatgaagacaatccttatagtagtgattttggaatgt |
588 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4507948 |
gcacaaatgaacttcttagctgatattgtccatggtttcaactctcaaaaagttatagctatatatgaagacaatccttatagtagtgattttggaatgt |
4507849 |
T |
|
| Q |
589 |
taaacctcttatcggaggctctcgaaaaggttaactcgaagattgagtatcgattagttcttccaccattcacttctttatcagatccaaaagggtttgt |
688 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4507848 |
taaacctcttatcggaggctctcgaaaaggttaactcgaagattgagtatcgattagttcttccaccattcacttctttatcagatccaaaagggtttgt |
4507749 |
T |
|
| Q |
689 |
tcttgatgaactgttgaagttgttgcggctaaaatctcgtgtttttattgtacttcaagcatcattacc |
757 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4507748 |
tcttgatgaactgttgaagttgttgcggctaaaatctcgtgtttttattgtacttcaagcatcattacc |
4507680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 272 - 757
Target Start/End: Complemental strand, 4500922 - 4500439
Alignment:
| Q |
272 |
tcttgcttcttgttggtttt-cagctgaagatttaattactaaagagaaagttaaagtcattattggcatggaaacatggcaagaagctgctattgttgc |
370 |
Q |
| |
|
||||||||||| |||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4500922 |
tcttgcttctttttggtttttcagctgaagaattaattactaaagagaaagttaaagtcattattggcatggaaacatggcaagaagctgctattgttgc |
4500823 |
T |
|
| Q |
371 |
tgactttggagccaagtttcaaataccaacaatttcattttcttctcctccgttagtctcttcatcatcaatgcaatttcgttggcctttcttgattcaa |
470 |
Q |
| |
|
||| ||||||||| ||||||| ||||||||||||||||||||||||| |||||| ||||||||| || |||| ||||||||| ||||||||||| |
|
|
| T |
4500822 |
tgatgttggagccatgtttcaagtaccaacaatttcattttcttctcca---ttagtcccttcatcattaacgcaaactcgttggccattcttgattcag |
4500726 |
T |
|
| Q |
471 |
atggctcaaaatcattctgcacaaatgaacttcatagctgatattgtccatagtttcaactctcaaaaagttatagctatatatgaagacaatccttata |
570 |
Q |
| |
|
|||||||||||||| |||||||||| ||||||||| ||| ||| ||||| ||||||||||||||| |||||||||||||||||||| || ||||| | |
|
|
| T |
4500725 |
atggctcaaaatcaaactgcacaaataaacttcatatctggtataatccatgctttcaactctcaaaaggttatagctatatatgaagagaacccttaca |
4500626 |
T |
|
| Q |
571 |
gtagtgattttggaatgttaaacctcttatcggaggctctcgaaaaggttaactcgaagattgagtatcgattagttcttccaccattcacttctttatc |
670 |
Q |
| |
|
|||||||||||||||||||| ||||||||| ||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
4500625 |
atagtgattttggaatgttaagcctcttatccgaggctctccaaaaggttaactcccagattgagtatcaattagttcttccaccattcacttctttatc |
4500526 |
T |
|
| Q |
671 |
agatccaaaagggtttgttcttgatgaactgttgaagttgttgcggctaaaatctcgtgtttttattgtacttcaagcatcattacc |
757 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4500525 |
tgatccaaaagggtttgttcttgatgaattgttgaagttgttgaggctaaaatctcgtgtttttattgtacttcaagcatcattacc |
4500439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 272 - 751
Target Start/End: Complemental strand, 4495354 - 4494877
Alignment:
| Q |
272 |
tcttgcttcttgttggtttt-cagctgaagatttaattactaaagagaaagttaaagtcattattggcatggaaacatggcaagaagctgctattgttgc |
370 |
Q |
| |
|
||||||||||| |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||| | || |
|
|
| T |
4495354 |
tcttgcttcttattggtttttcagctgaagaattaattactaaagagaaagttaaagtcattattggcacggaaacatggcaggaagcgtctattatggc |
4495255 |
T |
|
| Q |
371 |
tgactttggagccaagtttcaaataccaacaatttcattttcttctcctccgttagtctcttcatcatcaatgcaatttcgttggcctttcttgattcaa |
470 |
Q |
| |
|
||| | ||||||| ||||||| ||||||||||||||||||| ||| | |||||| ||||||||| ||||||| |||||||||| |||||||||||| |
|
|
| T |
4495254 |
tgatgtcggagccatgtttcaagtaccaacaatttcattttcctcttca---ttagtcccttcatcattaatgcaacttcgttggccattcttgattcaa |
4495158 |
T |
|
| Q |
471 |
atggctcaaaatcattctgcacaaatgaacttcatagctgatattgtccatagtttcaactctcaaaaagttatagctatatatgaagacaatccttata |
570 |
Q |
| |
|
|||||||||||||| ||||||||||||| |||||| ||||||| ||||| ||||||||||||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
4495157 |
atggctcaaaatcaaactgcacaaatgaaattcatatctgatataatccatgctttcaactctcaaaaggttatagctatatatgaagacaacccttata |
4495058 |
T |
|
| Q |
571 |
gtagtgattttggaatgttaaacctcttatcggaggctctcgaaaaggttaactcgaagattgagtatcgattagttcttccaccattcacttctttatc |
670 |
Q |
| |
|
|||||||| ||||| ||||| ||||||||| ||||||||| ||||||||||||| |||||||||||| ||||||||||| ||||||||||||| || |
|
|
| T |
4495057 |
atagtgattctggaaggttaagcctcttatccgaggctctccaaaaggttaactcccagattgagtatcagttagttcttccttcattcacttctttgtc |
4494958 |
T |
|
| Q |
671 |
agatccaaaagggtttgttcttgatgaactgttgaagttgttgcggctaaaatctcgtgtttttattgtacttcaagcatc |
751 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
4494957 |
tgatccaaaagggtttgttcttgatgaattgttgaagttgttgccgctaaaatctcgtgtttttattgtacttcaagcatc |
4494877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 8 - 67
Target Start/End: Complemental strand, 4508436 - 4508377
Alignment:
| Q |
8 |
atccttttcttccgtgactctggtagaaaccctttacaagcagcttcagctggtgagtac |
67 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
4508436 |
atccttttcttccgtgactctggtaaaaaccctttacaagcagcttcagctggtgagtac |
4508377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 15 - 67
Target Start/End: Complemental strand, 4495645 - 4495593
Alignment:
| Q |
15 |
tcttccgtgactctggtagaaaccctttacaagcagcttcagctggtgagtac |
67 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||| ||||| ||||| |
|
|
| T |
4495645 |
tcttccgtgactctggtagaaaccctttacatgcagcttcaactggtcagtac |
4495593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 15 - 61
Target Start/End: Complemental strand, 4501196 - 4501150
Alignment:
| Q |
15 |
tcttccgtgactctggtagaaaccctttacaagcagcttcagctggt |
61 |
Q |
| |
|
||||| |||| ||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
4501196 |
tcttctgtgattctggtagaaaccctttacaatcagcttcaactggt |
4501150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000003; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 213 - 251
Target Start/End: Complemental strand, 7730551 - 7730513
Alignment:
| Q |
213 |
atttatataataagagcttaattaagttgtttatccaaa |
251 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
7730551 |
atttatataataagtgcttaattaagttgtttatccaaa |
7730513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 107 - 137
Target Start/End: Complemental strand, 47146093 - 47146063
Alignment:
| Q |
107 |
tttggattgacttatttgaacttatatattg |
137 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
47146093 |
tttggattgacttatttgaacttatatattg |
47146063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 95 - 125
Target Start/End: Original strand, 50742747 - 50742777
Alignment:
| Q |
95 |
acttacgacctgtttggattgacttatttga |
125 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
50742747 |
acttacgacctgtttggattgacttatttga |
50742777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 251
Target Start/End: Original strand, 28750042 - 28750079
Alignment:
| Q |
214 |
tttatataataagagcttaattaagttgtttatccaaa |
251 |
Q |
| |
|
|||||||||||||| ||||||||||||| ||||||||| |
|
|
| T |
28750042 |
tttatataataagaacttaattaagttgcttatccaaa |
28750079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 212
Target Start/End: Original strand, 46609159 - 46609200
Alignment:
| Q |
171 |
ttataccttatatgaaaacagtttgacgttattttgtttttt |
212 |
Q |
| |
|
||||||||||||||||||||||||||| || ||||||||||| |
|
|
| T |
46609159 |
ttataccttatatgaaaacagtttgactttgttttgtttttt |
46609200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 171 - 205
Target Start/End: Original strand, 5006575 - 5006609
Alignment:
| Q |
171 |
ttataccttatatgaaaacagtttgacgttatttt |
205 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| |
|
|
| T |
5006575 |
ttataccttatatgaaaacagtttgactttatttt |
5006609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 143
Target Start/End: Original strand, 3092542 - 3092581
Alignment:
| Q |
104 |
ctgtttggattgacttatttgaacttatatattgacgcaa |
143 |
Q |
| |
|
|||||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
3092542 |
ctgtttggattgacttatttgagcttatttattgacgcaa |
3092581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 101 - 131
Target Start/End: Complemental strand, 4764049 - 4764019
Alignment:
| Q |
101 |
gacctgtttggattgacttatttgaacttat |
131 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
4764049 |
gacctgtttggattgacttatttgaacttat |
4764019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 139
Target Start/End: Original strand, 35625020 - 35625055
Alignment:
| Q |
104 |
ctgtttggattgacttatttgaacttatatattgac |
139 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| |
|
|
| T |
35625020 |
ctgtttggattgacttatttgagcttatatattgac |
35625055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 105 - 139
Target Start/End: Original strand, 2081002 - 2081036
Alignment:
| Q |
105 |
tgtttggattgacttatttgaacttatatattgac |
139 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| |
|
|
| T |
2081002 |
tgtttggattgacttatttgaacttatctattgac |
2081036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 101 - 131
Target Start/End: Original strand, 33723297 - 33723327
Alignment:
| Q |
101 |
gacctgtttggattgacttatttgaacttat |
131 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
33723297 |
gacctgtttggattgacttatttgaacttat |
33723327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 136
Target Start/End: Complemental strand, 103583 - 103550
Alignment:
| Q |
103 |
cctgtttggattgacttatttgaacttatatatt |
136 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| |
|
|
| T |
103583 |
cctgtttggattgacttatttgagcttatatatt |
103550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 216 - 257
Target Start/End: Complemental strand, 36638679 - 36638638
Alignment:
| Q |
216 |
tatataataagagcttaattaagttgtttatccaaaaagggt |
257 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||| ||||| |
|
|
| T |
36638679 |
tatatgataagtgcttaattaagttgtttatccaaatagggt |
36638638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University