View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3023R-Insertion-4 (Length: 670)

Name: NF3023R-Insertion-4
Description: NF3023R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3023R-Insertion-4
NF3023R-Insertion-4
[»] chr1 (1 HSPs)
chr1 (9-670)||(5868652-5869314)


Alignment Details
Target: chr1 (Bit Score: 631; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 631; E-Value: 0
Query Start/End: Original strand, 9 - 670
Target Start/End: Complemental strand, 5869314 - 5868652
Alignment:
Q  9 aataattcccttcccgactacttatgttttatctgccttcgcaggttcttaaaccagttcaaagagtaatttcaattaccggatttctttaaccaatttg 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  5869314 aataattcccttcccgactacttatgttttatctgccttcgcaggttcttaaaccagttcaaagagtaatttcaattaccggatttctttacccaatttg 5869215  T
Q  109 caattagattttcaaattcaaccaatga-tatgcttcttcaattcaactccacccaagtatgcatcatggcaagaataattctgagcacaagttagttct 207  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5869214 caattagattttcaaattcaaccaatgaatatgcttcttcaattcaactccacccaagtatgcatcatggcaagaataattctgagcacaagttagttct 5869115  T
Q  208 cataatcacgacaatatgtttcagcagttaaattgcattatactactaggggaaattacaactgaagagatattaacaatagaatttgtcttttaaaata 307  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  5869114 cataatcacaacaatatgtttcagcagttaaattgcattatactactaggggaaattacaactgaagagatgttaacaatagaatttgtcttttaaaata 5869015  T
Q  308 tttaactggaaatattgtacacagtacacagaaatatatccagcattcacaagtaaagacttaaatatagactgaatgatgcatcaatccaagtattaat 407  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  5869014 tttaactggaaatattgtacacagtacacacaaatatatccagcattcacaagtaaagatttaaatatagactgaatgatgcatcaatccaagtattaat 5868915  T
Q  408 ggcaaaaagtaacaatggaaagatagctctatattattataaaaagtcatccaaactatttcaaacttgaaacatccaactacagtattattataaaaga 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5868914 ggcaaaaagtaacaatggaaagatagctctatattattataaaaagtcatccaaactatttcaaacttgaaacatccaactacagtattattataaaaga 5868815  T
Q  508 cattggaagatttgcagaacactaacaatatccttcattatccataactatattctcatgaacccctctacaaccttagtaatgatgatctaacgtgttt 607  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  5868814 cattggaagatttgcagaacactaacaatatccttcattatccataactatattctcatgaacccctctacaaccttaggaatgatgatctaacgtgttt 5868715  T
Q  608 aactatagatatactcctcaggttttgaggttatgtatttagctagatttctgtagtgataga 670  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5868714 aactatagatatactcctcaggttttgaggttatgtatttagctagatttctgtagtgataga 5868652  T

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