View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3023R-Insertion-5 (Length: 665)
Name: NF3023R-Insertion-5
Description: NF3023R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3023R-Insertion-5 |
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| [»] chr5 (5 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 568; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 568; E-Value: 0
Query Start/End: Original strand, 9 - 665
Target Start/End: Complemental strand, 4750082 - 4749427
Alignment:
| Q |
9 |
ctcatcaataacctataatgtagaatatatcatatcaaaacatacgttttattttggaaataacccaataatctatagtgtagaatatatcatgttaaaa |
108 |
Q |
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| T |
4750082 |
ctcatcaataacctataatgtagaatatatcatatcaaaacatactttttattttggaaataagccaataatctatagtgtagaatatatcatgttaaaa |
4749983 |
T |
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| Q |
109 |
tcataattttcattttggaaataaccatgcaacttagttgaaagatggttatttttaattcaggcaaaaatactttgttaaaataataatacttcttcgg |
208 |
Q |
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| T |
4749982 |
tcataattttcattttagaaataaccatgcaacttagttgaaagatggttatttttaattcaggcaaaaatactttgttaaaataatagtacttcttcga |
4749883 |
T |
|
| Q |
209 |
tcttaaatataagagaaatttggatcaacaaaatttgatgtatttaatcaactaaatatatcaacttttgttggccaaactttctacttatgaccggaat |
308 |
Q |
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| T |
4749882 |
tcttaaatatacgagaaatttgaatcaacaaaatttaatgtatttaatcaactaaatatatcaaattttgttgaccaaactttctacttatgaccggaat |
4749783 |
T |
|
| Q |
309 |
cattaatatgataagaaagaattcacctatcgcatacctgtgaaagatatttcatttgcctaatttccgtatgtgtaattcctttttgatcggaaggcct |
408 |
Q |
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| T |
4749782 |
cattaatatgataagaaagaattcacctatcgcatacctgagaaagatatttcatttgcctaatttccgtatgtgtaagtcctttttgatcggaaggcct |
4749683 |
T |
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| Q |
409 |
tcttgccataatctcttcttgttctttctgaaagggttcatagttttgtttgttnnnnnnnnnnnncagtaacaaattttgaaaatgccacattaattaa |
508 |
Q |
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| T |
4749682 |
tcttgccataatctcttcttgttctttctgaaagggttcatagttttgtttgtt-aaaaaaaaaaacagtaacaaattttgaaaatgccacattaattaa |
4749584 |
T |
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| Q |
509 |
tagtattaaaaccttggctctttcgaagacatgtggatgattagtgaggttgataacggtccacaaaacaccataagcagagctttcatgaccagctaac |
608 |
Q |
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| T |
4749583 |
tagtattaaaaccttggctctttcgaagacatgtggatgattagtgaggttgataacggtccacaaaacaccataagcagagctttcatgaccagctaac |
4749484 |
T |
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| Q |
609 |
aagaacaaaagaagcaagtctataatgtcttcatcttccaacttctcaccctcgtcg |
665 |
Q |
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| T |
4749483 |
aagaacaaaagaagcaagtctataatgtcttcatcttccaacttctcaccctcgtcg |
4749427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 519 - 650
Target Start/End: Complemental strand, 4758054 - 4757923
Alignment:
| Q |
519 |
accttggctctttcgaagacatgtggatgattagtgaggttgataacggtccacaaaacaccataagcagagctttcatgaccagctaacaagaacaaaa |
618 |
Q |
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|||||||| |||| ||||||||||||||||| | |||||| |||| |||||||||| |||| |||||||||||||||||||||||||||||||| || |
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| T |
4758054 |
accttggccctttggaagacatgtggatgatcaatgaggtaaataatagtccacaaaattccatgagcagagctttcatgaccagctaacaagaacacaa |
4757955 |
T |
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| Q |
619 |
gaagcaagtctataatgtcttcatcttccaac |
650 |
Q |
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| T |
4757954 |
gaagcaagtctataatgtcttcatcctccaac |
4757923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 313 - 442
Target Start/End: Complemental strand, 4758324 - 4758195
Alignment:
| Q |
313 |
aatatgataagaaagaattcacctatcgcatacctgtgaaagatatttcatttgcctaatttccgtatgtgtaattcctttttgatcggaaggccttctt |
412 |
Q |
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||||||| |||||||||||||| | || ||||||| ||||||||||| ||||||| |||||||| || | | | |||||||||| |||||||||| || |
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| T |
4758324 |
aatatgacaagaaagaattcacatttcacatacctttgaaagatattgcatttgcttaatttccttaaggttcagtcctttttgagtggaaggccttgtt |
4758225 |
T |
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| Q |
413 |
gccataatctcttcttgttctttctgaaag |
442 |
Q |
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| T |
4758224 |
tccatgatctcttcttgttctttctgaaag |
4758195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 38
Target Start/End: Complemental strand, 4758402 - 4758373
Alignment:
| Q |
9 |
ctcatcaataacctataatgtagaatatat |
38 |
Q |
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| T |
4758402 |
ctcatcaataacctataatgtagaatatat |
4758373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 216 - 256
Target Start/End: Complemental strand, 21576057 - 21576017
Alignment:
| Q |
216 |
tataagagaaatttggatcaacaaaatttgatgtatttaat |
256 |
Q |
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| T |
21576057 |
tataagagaattttggatcaacaaaagttgatgtatctaat |
21576017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 216 - 251
Target Start/End: Complemental strand, 17344324 - 17344289
Alignment:
| Q |
216 |
tataagagaaatttggatcaacaaaatttgatgtat |
251 |
Q |
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| T |
17344324 |
tataagagaaatttggatcaacaaaagttgatgtat |
17344289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 216 - 254
Target Start/End: Original strand, 41615695 - 41615733
Alignment:
| Q |
216 |
tataagagaaatttggatcaacaaaatttgatgtattta |
254 |
Q |
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| T |
41615695 |
tataagagaaaattggatcaacaaaagttgatgtattta |
41615733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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