View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3023R-Insertion-7 (Length: 520)

Name: NF3023R-Insertion-7
Description: NF3023R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3023R-Insertion-7
NF3023R-Insertion-7
[»] chr1 (14 HSPs)
chr1 (9-520)||(13085591-13086092)
chr1 (13-136)||(13271444-13271567)
chr1 (13-219)||(13081076-13081282)
chr1 (13-186)||(12964086-12964259)
chr1 (13-190)||(13244732-13244909)
chr1 (43-106)||(19279409-19279472)
chr1 (8-115)||(30368314-30368421)
chr1 (27-151)||(13094242-13094366)
chr1 (43-185)||(13070417-13070559)
chr1 (43-151)||(13129671-13129779)
chr1 (43-151)||(13161364-13161472)
chr1 (8-106)||(13100889-13100987)
chr1 (47-151)||(13010616-13010720)
chr1 (13-131)||(13065424-13065542)


Alignment Details
Target: chr1 (Bit Score: 391; Significance: 0; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 9 - 520
Target Start/End: Complemental strand, 13086092 - 13085591
Alignment:
Q  9 cctcgaagttgtcttgggaaagatattagcattgttcaaatgaaaatggttgcagctgctatattatggaagtttcacatacaagttgtggaaggtcatt 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  13086092 cctcgaagttgtcttgggaaagatattagcattgttcaaatgaaaatggttgcagctgctatgttatggaagtttcacatacaagttgtggaaggtcatt 13085993  T
Q  109 ctgtaactccaagagtttctattgttctccgcatggaacatggattcaaagtcaaagttagtagaasatgaatttgatataaacattatcagttttgtga 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||    
T  13085992 ctgtaactccaagagtttctattgttctccgcatggaacatggattcaaagtcaaagttagtaaaagatgaatttgatataaacattatcagttttttga 13085893  T
Q  209 agttaagaatgcttattgatatatgttcaatcattttattttccatttgtgtttaatgatgttcaaatagatggatatctttaatgtttatgataagtta 308  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||  |       |||||||| ||||||||||||||||    
T  13085892 agttaagaatgctcattgatatatgttcaatcattttattttccatttgtgtttaatgatattcattt-------tatctttagtgtttatgataagtta 13085800  T
Q  309 stgttatccttggnnnnnnnataataccggtattcaatttggtttattttcggttacttctctatctaactacactttggatatataaaaagggttatgt 408  Q
     ||||||||||||        ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||    
T  13085799 gtgttatccttggttcttttctaataccggtattcaatttggtttattttcggttaattctctatctacctacactttggatatataaaaagggttatgt 13085700  T
Q  409 attccatcttatattagataataatttattctagtctttattaagaaattcctaggaattctctatctttgtcaagttattacaaattctctatgtttct 508  Q
    |||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| |||||    
T  13085699 attccatcttatattag---ataatttattctagtctttattaagaaattcctaggaattctttatctttgtcaatttattacaaattctctatatttct 13085603  T
Q  509 atagttattaag 520  Q
    ||||||||||||    
T  13085602 atagttattaag 13085591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 13 - 136
Target Start/End: Complemental strand, 13271567 - 13271444
Alignment:
Q  13 gaagttgtcttgggaaagatattagcattgttcaaatgaaaatggttgcagctgctatattatggaagtttcacatacaagttgtggaaggtcattctgt 112  Q
    |||| ||||||||||||||||||||| || ||||||||||||||||||||||| || |||||||||||||||||||||| || ||||||||||| |||||    
T  13271567 gaagctgtcttgggaaagatattagctttattcaaatgaaaatggttgcagcttctgtattatggaagtttcacatacatgtggtggaaggtcagtctgt 13271468  T
Q  113 aactccaagagtttctattgttct 136  Q
     ||||| || ||||| ||||||||    
T  13271467 tactcctagggtttcgattgttct 13271444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 13 - 219
Target Start/End: Original strand, 13081076 - 13081282
Alignment:
Q  13 gaagttgtcttgggaaagatattagcattgttcaaatgaaaatggttgcagctgctatattatggaagtttcacatacaagttgtggaaggtcattctgt 112  Q
    |||| ||||||||||||||||||||  || |||||||||||||||||||||||||  | ||||  ||||||||||| || || ||||||||||| ||  |    
T  13081076 gaagctgtcttgggaaagatattagttttcttcaaatgaaaatggttgcagctgcagttttatttaagtttcacattcaggtggtggaaggtcactcaat 13081175  T
Q  113 aactccaagagtttctattgttctccgcatggaacatggattcaaagtcaaagttagtagaasatgaatttgatataaacattatcagttttgtgaagtt 212  Q
    || ||| || ||||||||| | || |||||||||||||| || || |||||| || ||| || ||| ||||||||||| |||||  |||||| | |||||    
T  13081176 aattcctagggtttctattctccttcgcatggaacatggctttaaggtcaaaattcgtaaaagatgcatttgatataagcattacaagttttataaagtt 13081275  T
Q  213 aagaatg 219  Q
     ||||||    
T  13081276 cagaatg 13081282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 13 - 186
Target Start/End: Original strand, 12964086 - 12964259
Alignment:
Q  13 gaagttgtcttgggaaagatattagcattgttcaaatgaaaatggttgcagctgctatattatggaagtttcacatacaagttgtggaaggtcattctgt 112  Q
    |||||||| ||||||||||||||||| |||||||||||||||||||||| |||  | | || ||||||||||||||| |||| ||||||||||| | |||    
T  12964086 gaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgctgctaatgtgttgtggaagtttcacatagaagtggtggaaggtcactttgt 12964185  T
Q  113 aactccaagagtttctattgttctccgcatggaacatggattcaaagtcaaagttagtagaasatgaatttgat 186  Q
     |||||||| ||| |||| ||||| || ||| ||||||| || || |||||||| |||  || ||| |||||||    
T  12964186 tactccaagggttgctatggttcttcgtatgaaacatggtttgaaggtcaaagtcagtcaaagatgcatttgat 12964259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 13 - 190
Target Start/End: Original strand, 13244732 - 13244909
Alignment:
Q  13 gaagttgtcttgggaaagatattagcattgttcaaatgaaaatggttgcagctgctatattatggaagtttcacatacaagttgtggaaggtcattctgt 112  Q
    |||||||| ||||||||||| ||||| | |||||||||||||||||||||||| || | ||||||||||||| |||||| || |||||||||||  ||||    
T  13244732 gaagttgtattgggaaagatcttagcttcgttcaaatgaaaatggttgcagcttctttgttatggaagtttcgcatacaggtggtggaaggtcaccctgt 13244831  T
Q  113 aactccaagagtttctattgttctccgcatggaacatggattcaaagtcaaagttagtagaasatgaatttgatataa 190  Q
    ||| |  |||  |||||||||  | |||||| |||| || || || ||| |||| |||| || ||| |||||||||||    
T  13244832 aacgctgagaacttctattgtcgttcgcatgaaacacggcttaaaggtcgaagtcagtaaaagatgcatttgatataa 13244909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 43 - 106
Target Start/End: Original strand, 19279409 - 19279472
Alignment:
Q  43 ttcaaatgaaaatggttgcagctgctatattatggaagtttcacatacaagttgtggaaggtca 106  Q
    |||||||||||||||||||||||||| ||||||||||||||| |||||| || |||||||||||    
T  19279409 ttcaaatgaaaatggttgcagctgctgtattatggaagtttcgcatacaggtcgtggaaggtca 19279472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 8 - 115
Target Start/End: Original strand, 30368314 - 30368421
Alignment:
Q  8 acctcgaagttgtcttgggaaagatattagcattgttcaaatgaaaatggttgcagctgctatattatggaagtttcacatacaagttgtggaaggtcat 107  Q
    |||| |||||||| | || |||||| ||||  | ||||||||||| ||||||||||||||  | |||||||||||||||||||| || |||||||||||     
T  30368314 acctagaagttgtatgggtaaagatcttagtttcgttcaaatgaagatggttgcagctgccttgttatggaagtttcacatacaggtcgtggaaggtcac 30368413  T
Q  108 tctgtaac 115  Q
     |||||||    
T  30368414 cctgtaac 30368421  T

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Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 27 - 151
Target Start/End: Complemental strand, 13094366 - 13094242
Alignment:
Q  27 aaagatattagcattgttcaaatgaaaatggttgcagctgctatattatggaagtttcacatacaagttgtggaaggtcattctgtaactccaagagttt 126  Q
    |||||||||||  |  |||||||||| ||||| ||||||||| | ||| |||||||||||||||| || |||||||||||  ||||||| |||||  |||    
T  13094366 aaagatattagtttcattcaaatgaagatggtcgcagctgctttgttacggaagtttcacatacaggtggtggaaggtcaccctgtaaccccaaggcttt 13094267  T
Q  127 ctattgttctccgcatggaacatgg 151  Q
    || |  |||| |||||| |||||||    
T  13094266 ctgtgtttcttcgcatgaaacatgg 13094242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 43 - 185
Target Start/End: Original strand, 13070417 - 13070559
Alignment:
Q  43 ttcaaatgaaaatggttgcagctgctatattatggaagtttcacatacaagttgtggaaggtcattctgtaactccaagagtttctattgttctccgcat 142  Q
    |||||||||| ||||| ||||||||| | |||  ||||||||||||||| || |||||||||||  ||||||| ||||   ||||  ||||||| | |||    
T  13070417 ttcaaatgaagatggtcgcagctgctttgttacagaagtttcacatacaggtggtggaaggtcaccctgtaaccccaaagctttcatttgttcttcacat 13070516  T
Q  143 ggaacatggattcaaagtcaaagttagtagaasatgaatttga 185  Q
    | ||||||| ||||| || ||||| | || || ||| ||||||    
T  13070517 gaaacatggcttcaaggttaaagtcactaaaagatgcatttga 13070559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 43 - 151
Target Start/End: Complemental strand, 13129779 - 13129671
Alignment:
Q  43 ttcaaatgaaaatggttgcagctgctatattatggaagtttcacatacaagttgtggaaggtcattctgtaactccaagagtttctattgttctccgcat 142  Q
    |||||||||| ||||| ||||||||| | |||  ||||||||||||||| || |||||||||||  ||||||| |||||  ||||| |  |||| |||||    
T  13129779 ttcaaatgaagatggtcgcagctgctttgttacagaagtttcacatacaggtggtggaaggtcaccctgtaaccccaaggctttctgtgcttcttcgcat 13129680  T
Q  143 ggaacatgg 151  Q
    | |||||||    
T  13129679 gaaacatgg 13129671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 43 - 151
Target Start/End: Complemental strand, 13161472 - 13161364
Alignment:
Q  43 ttcaaatgaaaatggttgcagctgctatattatggaagtttcacatacaagttgtggaaggtcattctgtaactccaagagtttctattgttctccgcat 142  Q
    |||||||||| ||||| ||||||||| | ||| |||||||||||||||| || |||||||||||   |||||| |||||  ||||| |  |||| |||||    
T  13161472 ttcaaatgaagatggtcgcagctgctttgttacggaagtttcacatacaggtggtggaaggtcaccttgtaaccccaaggctttctgtgtttcttcgcat 13161373  T
Q  143 ggaacatgg 151  Q
    | |||||||    
T  13161372 gaaacatgg 13161364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 106
Target Start/End: Complemental strand, 13100987 - 13100889
Alignment:
Q  8 acctcgaagttgtcttgggaaagatattagcattgttcaaatgaaaatggttgcagctgctatattatggaagtttcacatacaagttgtggaaggtca 106  Q
    |||| |||||||| | || || ||||||||| |  |||||||||| ||||| ||||||||| | |||  ||||||||||||||| || |||||||||||    
T  13100987 acctagaagttgtatgggtaaggatattagcttcattcaaatgaagatggtcgcagctgctttgttaccgaagtttcacatacaggtggtggaaggtca 13100889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 47 - 151
Target Start/End: Complemental strand, 13010720 - 13010616
Alignment:
Q  47 aatgaaaatggttgcagctgctatattatggaagtttcacatacaagttgtggaaggtcattctgtaactccaagagtttctattgttctccgcatggaa 146  Q
    |||||| ||||| ||||||| | | |||||||| |||| ||||||||| |||||||||||| |  |||| |||| | |||||||| |||| |||||  ||    
T  13010720 aatgaagatggtcgcagctgatttgttatggaaatttcgcatacaagtggtggaaggtcatgccataaccccaaaactttctattattcttcgcataaaa 13010621  T
Q  147 catgg 151  Q
    |||||    
T  13010620 catgg 13010616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 131
Target Start/End: Original strand, 13065424 - 13065542
Alignment:
Q  13 gaagttgtcttgggaaagatattagcattgttcaaatgaaaatggttgcagctgctatattatggaagtttcacatacaagttgtggaaggtcattctgt 112  Q
    |||||||| | || |||||||| | | | ||| ||||||| |||| ||| || |||||| |||||||||||  ||||||  | ||||| |||||| ||||    
T  13065424 gaagttgtttgggtaaagatatcaccttcgttgaaatgaagatggctgccgcggctatactatggaagttttgcatacatttagtggatggtcatcctgt 13065523  T
Q  113 aactccaagagtttctatt 131  Q
    |||||||||  ||||||||    
T  13065524 aactccaaggctttctatt 13065542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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