View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3023R-Insertion-8 (Length: 513)

Name: NF3023R-Insertion-8
Description: NF3023R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3023R-Insertion-8
NF3023R-Insertion-8
[»] scaffold0277 (2 HSPs)
scaffold0277 (267-381)||(5562-5665)
scaffold0277 (269-376)||(14082-14178)
[»] chr6 (11 HSPs)
chr6 (269-376)||(28780780-28780876)
chr6 (267-317)||(27228478-27228528)
chr6 (267-308)||(27594029-27594070)
chr6 (267-311)||(27532569-27532613)
chr6 (274-380)||(26720073-26720177)
chr6 (323-381)||(26801694-26801752)
chr6 (267-381)||(27585549-27585662)
chr6 (267-311)||(27699249-27699293)
chr6 (267-311)||(27719499-27719543)
chr6 (267-311)||(27725719-27725763)
chr6 (267-364)||(27581746-27581841)
[»] chr4 (1 HSPs)
chr4 (322-381)||(18683775-18683833)
[»] scaffold0349 (2 HSPs)
scaffold0349 (267-311)||(4295-4339)
scaffold0349 (267-311)||(8921-8965)
[»] chr5 (1 HSPs)
chr5 (10-67)||(4597486-4597544)
[»] chr3 (1 HSPs)
chr3 (10-40)||(28525451-28525481)
[»] chr2 (1 HSPs)
chr2 (14-63)||(41130369-41130416)
[»] chr1 (1 HSPs)
chr1 (10-66)||(35425846-35425900)


Alignment Details
Target: scaffold0277 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 267 - 381
Target Start/End: Complemental strand, 5665 - 5562
Alignment:
Q  267 aagacattcacactgctttaaagaaattacatggaagaaggatgtaggaaattactgatggtcactttacagaagataggaaatgcgaaggaagtttccc 366  Q
    |||||||| ||| |||||||||||||||||||||||||||||||            ||||||  ||||||||||||||||||||| ||||||||||||||    
T  5665 aagacattgacattgctttaaagaaattacatggaagaaggatga-----------gatggttgctttacagaagataggaaatgagaaggaagtttccc 5577  T
Q  367 acttggtaaaagtgt 381  Q
    |||||||||||||||    
T  5576 acttggtaaaagtgt 5562  T

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Target: scaffold0277; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 269 - 376
Target Start/End: Complemental strand, 14178 - 14082
Alignment:
Q  269 gacattcacactgctttaaagaaattacatggaagaaggatgtaggaaattactgatggtcactttacagaagataggaaatgcgaaggaagtttcccac 368  Q
    |||||||| | |||||||||||||||||||||||||||||||            ||||||  ||||||||||||||||||||| ||||||||||||||||    
T  14178 gacattcatattgctttaaagaaattacatggaagaaggatga-----------gatggttgctttacagaagataggaaatgagaaggaagtttcccac 14090  T

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Target: chr6 (Bit Score: 46; Significance: 5e-17; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 269 - 376
Target Start/End: Original strand, 28780780 - 28780876
Alignment:
Q  269 gacattcacactgctttaaagaaattacatggaagaaggatgtaggaaattactgatggtcactttacagaagataggaaatgcgaaggaagtttcccac 368  Q
    |||||||| | |||||||||||||||||||||||||||||||            ||||||  ||||||||||||||||||||| ||||||||||||||||    
T  28780780 gacattcatattgctttaaagaaattacatggaagaaggatga-----------gatggttgctttacagaagataggaaatgagaaggaagtttcccac 28780868  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 267 - 317
Target Start/End: Original strand, 27228478 - 27228528
Alignment:
Q  267 aagacattcacactgctttaaagaaattacatggaagaaggatgtaggaaa 317  Q
    |||||||||||| | |||||||||||||||||||||| |||||||||||||    
T  27228478 aagacattcacattactttaaagaaattacatggaaggaggatgtaggaaa 27228528  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 267 - 308
Target Start/End: Complemental strand, 27594070 - 27594029
Alignment:
Q  267 aagacattcacactgctttaaagaaattacatggaagaagga 308  Q
    |||||||||||| |||||||||||||||||||||||||||||    
T  27594070 aagacattcacattgctttaaagaaattacatggaagaagga 27594029  T

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Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 267 - 311
Target Start/End: Complemental strand, 27532613 - 27532569
Alignment:
Q  267 aagacattcacactgctttaaagaaattacatggaagaaggatgt 311  Q
    |||||||||||  ||||||||||||||||||||||||||||||||    
T  27532613 aagacattcacgttgctttaaagaaattacatggaagaaggatgt 27532569  T

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Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 274 - 380
Target Start/End: Original strand, 26720073 - 26720177
Alignment:
Q  274 tcacactgctttaaagaaattacatggaagaaggatgtaggaaattactgatggtcactttacagaagataggaaatgcgaaggaagtttcccacttggt 373  Q
    ||||| ||||||| |||||||||||||||  || | |||| |||  | || |||| | |||||||| ||||| ||||| ||||||||||||| |||||||    
T  26720073 tcacattgctttacagaaattacatggaaagagcaggtagcaaa--agtggtggttattttacagaggatagaaaatgagaaggaagtttccaacttggt 26720170  T
Q  374 aaaagtg 380  Q
    |||||||    
T  26720171 aaaagtg 26720177  T

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Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 323 - 381
Target Start/End: Original strand, 26801694 - 26801752
Alignment:
Q  323 gatggtcactttacagaagataggaaatgcgaaggaagtttcccacttggtaaaagtgt 381  Q
    |||||| |||||||| ||||||||||||| ||| ||||||||| |||||| ||||||||    
T  26801694 gatggttactttacataagataggaaatgggaaagaagtttccaacttggaaaaagtgt 26801752  T

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Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 267 - 381
Target Start/End: Complemental strand, 27585662 - 27585549
Alignment:
Q  267 aagacattcacactgctttaaagaaattacatggaagaaggatgtaggaaattactgat--ggtcactttacagaagataggaaatgcgaaggaagtttc 364  Q
    |||||||||||| |||||| |||||||||||| |||||| |||||||| ||  | ||||   || ||||||||| | ||| |||||| ||||||||||||    
T  27585662 aagacattcacattgcttttaagaaattacatagaagaaagatgtagggaa--agtgatagtgttactttacag-acatatgaaatgggaaggaagtttc 27585566  T
Q  365 ccacttggtaaaagtgt 381  Q
    ||||||| || ||||||    
T  27585565 ccacttgctacaagtgt 27585549  T

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Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 267 - 311
Target Start/End: Complemental strand, 27699293 - 27699249
Alignment:
Q  267 aagacattcacactgctttaaagaaattacatggaagaaggatgt 311  Q
    |||||||| ||| |||| |||||||||||||||||||||||||||    
T  27699293 aagacattgacattgctctaaagaaattacatggaagaaggatgt 27699249  T

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Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 267 - 311
Target Start/End: Complemental strand, 27719543 - 27719499
Alignment:
Q  267 aagacattcacactgctttaaagaaattacatggaagaaggatgt 311  Q
    |||||||| ||| |||||||| |||||||||||||||||||||||    
T  27719543 aagacattgacattgctttaacgaaattacatggaagaaggatgt 27719499  T

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Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 267 - 311
Target Start/End: Complemental strand, 27725763 - 27725719
Alignment:
Q  267 aagacattcacactgctttaaagaaattacatggaagaaggatgt 311  Q
    |||||||| ||| |||| |||||||||||||||||||||||||||    
T  27725763 aagacattgacattgctctaaagaaattacatggaagaaggatgt 27725719  T

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Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 267 - 364
Target Start/End: Complemental strand, 27581841 - 27581746
Alignment:
Q  267 aagacattcacactgctttaaagaaattacatggaagaaggatgtaggaaattactgatggtcactttacagaagataggaaatgcgaaggaagtttc 364  Q
    |||||||||||| ||||||| ||| |||||||||||  |||| |||| |||  | ||||||| | | || ||||||||||||||  ||||||||||||    
T  27581841 aagacattcacattgctttacagacattacatggaaagaggaggtagaaaa--agtgatggttattgtatagaagataggaaataggaaggaagtttc 27581746  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 322 - 381
Target Start/End: Complemental strand, 18683833 - 18683775
Alignment:
Q  322 tgatggtcactttacagaagataggaaatgcgaaggaagtttcccacttggtaaaagtgt 381  Q
    ||||||| ||||| ||||| ||| |||||| |||||||||||||||||||||||||||||    
T  18683833 tgatggttactttgcagaa-atacgaaatgggaaggaagtttcccacttggtaaaagtgt 18683775  T

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Target: scaffold0349 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 267 - 311
Target Start/End: Complemental strand, 4339 - 4295
Alignment:
Q  267 aagacattcacactgctttaaagaaattacatggaagaaggatgt 311  Q
    |||||||| ||| |||| |||||||||||||||||||||||||||    
T  4339 aagacattgacattgctctaaagaaattacatggaagaaggatgt 4295  T

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Target: scaffold0349; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 267 - 311
Target Start/End: Complemental strand, 8965 - 8921
Alignment:
Q  267 aagacattcacactgctttaaagaaattacatggaagaaggatgt 311  Q
    |||||||| ||| |||||||| |||||||||||||||||||||||    
T  8965 aagacattgacattgctttaacgaaattacatggaagaaggatgt 8921  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 10 - 67
Target Start/End: Complemental strand, 4597544 - 4597486
Alignment:
Q  10 ctctccatcacaatggttcatttcaagagtcttaact-ttcttattagcaagttaaaat 67  Q
    |||||||||||||||||||| ||||||||||| || | ||||||||| ||||| |||||    
T  4597544 ctctccatcacaatggttcacttcaagagtctcaattcttcttattaacaagtaaaaat 4597486  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 10 - 40
Target Start/End: Complemental strand, 28525481 - 28525451
Alignment:
Q  10 ctctccatcacaatggttcatttcaagagtc 40  Q
    |||||||||||||||||||||||||||||||    
T  28525481 ctctccatcacaatggttcatttcaagagtc 28525451  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 14 - 63
Target Start/End: Original strand, 41130369 - 41130416
Alignment:
Q  14 ccatcacaatggttcatttcaagagtcttaactttcttattagcaagtta 63  Q
    |||||||||||||||||||||||||||| |   |||||||||||||||||    
T  41130369 ccatcacaatggttcatttcaagagtctca--cttcttattagcaagtta 41130416  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 10 - 66
Target Start/End: Original strand, 35425846 - 35425900
Alignment:
Q  10 ctctccatcacaatggttcatttcaagagtcttaactttcttattagcaagttaaaa 66  Q
    |||||||||||||||||||| || |||||||| |||  |||||||||||||||||||    
T  35425846 ctctccatcacaatggttcactt-aagagtctcaac-atcttattagcaagttaaaa 35425900  T

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