View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3023R-Insertion-9 (Length: 468)
Name: NF3023R-Insertion-9
Description: NF3023R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3023R-Insertion-9 |
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Alignment Details
Target: chr2 (Bit Score: 324; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 7 - 398
Target Start/End: Complemental strand, 45466944 - 45466550
Alignment:
| Q |
7 |
cagatataacttcaaccaaa--ggtcacata-tcagcagctaccaaaatgtattcattttcgcatgatcatgggaatgttccaacaaagtccattcttct |
103 |
Q |
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| T |
45466944 |
cagatataacttcaacccatttggtcacataatcagcagctaacaaaatgtattcattttcgcatgatgatgggaatgttccaacaaagtccattcttct |
45466845 |
T |
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| Q |
104 |
gcggtcaaaaacctttgcctccaacacattctaagggtcatccgaagtggccctctgtaatgaaaatatcatggaggggaaggctatacacccgtaaaag |
203 |
Q |
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| T |
45466844 |
gcggtcaaaaacctttgcctccaacacattctaagggtcatctgaagtggccctctgtaatgaaaatatcatgaaggtgaaggctatacacccgtaaaag |
45466745 |
T |
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| Q |
204 |
tcactttcgtctatgttggctacaacgttttctggagctcccctcccttgtgaccgaatttgacactgttctcatatgcattaaattgttcactaaatgg |
303 |
Q |
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| T |
45466744 |
tcactttcgtctatgttgactacaacgttttctggagctcccctcccttgtgaccgaatttgacactattctcatatgcattaaattgttccctaaatgg |
45466645 |
T |
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| Q |
304 |
acatcatgtggtagagatactttgcaattctaagatgtattagacacacaaattggataaggttttattgtggcaagagatcttttataagttat |
398 |
Q |
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| T |
45466644 |
acatcatgtggtagagatactttgcaattctaagatgtattagacacaatatttggataaggttttattgtggcaagagatcttttataagttat |
45466550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 405 - 468
Target Start/End: Complemental strand, 45466493 - 45466430
Alignment:
| Q |
405 |
ttgtcgcttccgaacccttgacatcgttactaaagtctgattgtgggatatgctctattgtagc |
468 |
Q |
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| T |
45466493 |
ttgtcgcttccaaacccttgacatcgttactaaagtctgattgtgggatatgctctattgtagc |
45466430 |
T |
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