View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3023_high_4 (Length: 364)

Name: NF3023_high_4
Description: NF3023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3023_high_4
NF3023_high_4
[»] chr7 (15 HSPs)
chr7 (14-364)||(19937523-19937873)
chr7 (14-364)||(19968662-19969012)
chr7 (14-352)||(47601796-47602137)
chr7 (209-320)||(20230353-20230464)
chr7 (209-332)||(20262921-20263044)
chr7 (216-354)||(20287951-20288089)
chr7 (216-320)||(20242310-20242414)
chr7 (214-301)||(20169341-20169428)
chr7 (217-296)||(20300449-20300528)
chr7 (214-296)||(20063820-20063902)
chr7 (219-354)||(20293322-20293457)
chr7 (120-166)||(20302431-20302477)
chr7 (214-319)||(20278254-20278359)
chr7 (214-319)||(20282833-20282938)
chr7 (214-319)||(20302519-20302624)
[»] chr4 (2 HSPs)
chr4 (255-354)||(40825051-40825151)
chr4 (209-295)||(40820443-40820529)


Alignment Details
Target: chr7 (Bit Score: 351; Significance: 0; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 14 - 364
Target Start/End: Original strand, 19937523 - 19937873
Alignment:
Q  14 agaggaatggaataaacaaaattggaccgaaggatgtgttaggaggacacctcttcaacagtgcgaaagatacagaaatcaaaacacaagtgaagacagt 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19937523 agaggaatggaataaacaaaattggaccgaaggatgtgttaggaggacacctcttcaacagtgcgaaagatacagaaatcaaaacacaagtgaagacagt 19937622  T
Q  114 aacgctgatggttttttgaaactgccgatggtcaaagttcccgattttgcagacggatcatctctcacactgtcatcagaaacatgcaaaagtcaatgtc 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19937623 aacgctgatggttttttgaaactgccgatggtcaaagttcccgattttgcagacggatcatctctcacactgtcatcagaaacatgcaaaagtcaatgtc 19937722  T
Q  214 tggagaattgctcttgtgttgcatattcttatgatgctgacattggttgtatgtcttggactgggaacctagttgacatacaaaaattctcaaatggagg 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19937723 tggagaattgctcttgtgttgcatattcttatgatgctgacattggttgtatgtcttggactgggaacctagttgacatacaaaaattctcaaatggagg 19937822  T
Q  314 acttgacttgtatattcgtgtagcacacacagaacttggtaaacattgtat 364  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19937823 acttgacttgtatattcgtgtagcacacacagaacttggtaaacattgtat 19937873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 14 - 364
Target Start/End: Original strand, 19968662 - 19969012
Alignment:
Q  14 agaggaatggaataaacaaaattggaccgaaggatgtgttaggaggacacctcttcaacagtgcgaaagatacagaaatcaaaacacaagtgaagacagt 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19968662 agaggaatggaataaacaaaattggaccgaaggatgtgttaggaggacacctcttcaacagtgcgaaagatacagaaatcaaaacacaagtgaagacagt 19968761  T
Q  114 aacgctgatggttttttgaaactgccgatggtcaaagttcccgattttgcagacggatcatctctcacactgtcatcagaaacatgcaaaagtcaatgtc 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19968762 aacgctgatggttttttgaaactgccgatggtcaaagttcccgattttgcagacggatcatctctcacactgtcatcagaaacatgcaaaagtcaatgtc 19968861  T
Q  214 tggagaattgctcttgtgttgcatattcttatgatgctgacattggttgtatgtcttggactgggaacctagttgacatacaaaaattctcaaatggagg 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19968862 tggagaattgctcttgtgttgcatattcttatgatgctgacattggttgtatgtcttggactgggaacctagttgacatacaaaaattctcaaatggagg 19968961  T
Q  314 acttgacttgtatattcgtgtagcacacacagaacttggtaaacattgtat 364  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19968962 acttgacttgtatattcgtgtagcacacacagaacttggtaaacattgtat 19969012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 14 - 352
Target Start/End: Complemental strand, 47602137 - 47601796
Alignment:
Q  14 agaggaatggaataaacaaaattggaccgaaggatgtgttaggaggacacctcttcaacagtgcgaaagatacagaaatcaaaacacaagtgaagacagt 113  Q
    |||| ||||||||| |||||| ||||| |  || |||||||||||||||||||| || ||||| |||||||||||||||||||| | || || |||||||    
T  47602137 agagaaatggaatagacaaaaatggactggtgggtgtgttaggaggacacctctgcagcagtgtgaaagatacagaaatcaaaatataaatgtagacagt 47602038  T
Q  114 aacgctgatggttttttgaaactgccg---atggtcaaagttcccgattttgcagacggatcatctctcacactgtcatcagaaacatgcaaaagtcaat 210  Q
    || |||||||||||||  ||||||| |   |||||||||||||| |||||||||||  | || ||||||||||| |||||||||||||||| |||||| |    
T  47602037 aaagctgatggtttttacaaactgcagtggatggtcaaagttcctgattttgcagatcggtcgtctctcacactttcatcagaaacatgcagaagtcact 47601938  T
Q  211 gtctggagaattgctcttgtgt--tgcatattcttatgatgctgacattggttgtatgtcttggactgggaacctagttgacatacaaaaattctcaaat 308  Q
    |||| |||||||||| ||||||  |||||||||||||||| ||||||||||||||||||| ||||||||||| | ||||||||||||| |||||||||||    
T  47601937 gtcttgagaattgctgttgtgtgttgcatattcttatgatcctgacattggttgtatgtcctggactgggaatcaagttgacatacaacaattctcaaat 47601838  T
Q  309 ggaggacttgacttgtatattcgtgtagcacacacagaacttgg 352  Q
    |||||||  ||||| ||| | |||||||||||||||||||||||    
T  47601837 ggaggac--gacttatatttccgtgtagcacacacagaacttgg 47601796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 209 - 320
Target Start/End: Original strand, 20230353 - 20230464
Alignment:
Q  209 atgtctggagaattgctcttgtgttgcatattcttatgatgctgacattggttgtatgtcttggactgggaacctagttgacatacaaaaattctcaaat 308  Q
    |||| |||||||||||||||||||||| |||||| |||||| ||  ||||| |||||||||||||| || || ||| ||||||||||| |||||  || |    
T  20230353 atgtttggagaattgctcttgtgttgcgtattctcatgatgatgggattggctgtatgtcttggaccggcaatctacttgacatacaacaattccaaagt 20230452  T
Q  309 ggaggacttgac 320  Q
    ||||||||||||    
T  20230453 ggaggacttgac 20230464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 209 - 332
Target Start/End: Original strand, 20262921 - 20263044
Alignment:
Q  209 atgtctggagaattgctcttgtgttgcatattcttatgatgctgacattggttgtatgtcttggactgggaacctagttgacatacaaaaattctcaaat 308  Q
    |||| |||||||||||||||||||||| |||||| || ||| ||  ||||| ||||||||||||||  | || ||| ||||||||||| |||||  || |    
T  20262921 atgtttggagaattgctcttgtgttgcgtattctcatcatgatgtgattggctgtatgtcttggacccgaaatctacttgacatacaacaattccaaagt 20263020  T
Q  309 ggaggacttgacttgtatattcgt 332  Q
    |||||||||||| | |||||||||    
T  20263021 ggaggacttgacctatatattcgt 20263044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 216 - 354
Target Start/End: Original strand, 20287951 - 20288089
Alignment:
Q  216 gagaattgctcttgtgttgcatattcttatgatgctgacattggttgtatgtcttggactgggaacctagttgacatacaaaaattctcaaatggaggac 315  Q
    ||||||||||||||  ||||||||||| |    ||||  |||||||||||||||||||||||||| ||| |||| |||||| |||||  ||||||||| |    
T  20287951 gagaattgctcttgcattgcatattctcacaccgctgggattggttgtatgtcttggactgggaatctaattgatatacaacaattcaaaaatggagggc 20288050  T
Q  316 ttgacttgtatattcgtgtagcacacacagaacttggta 354  Q
    |||| || ||| ||||||||||  |  ||||||||||||    
T  20288051 ttgatttatatgttcgtgtagcctatgcagaacttggta 20288089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 216 - 320
Target Start/End: Original strand, 20242310 - 20242414
Alignment:
Q  216 gagaattgctcttgtgttgcatattcttatgatgctgacattggttgtatgtcttggactgggaacctagttgacatacaaaaattctcaaatggaggac 315  Q
    |||||||||||||||||||| |||||| || ||| ||  ||||| |||||||||||||| || || ||| |||||||| || |||||  || ||||||||    
T  20242310 gagaattgctcttgtgttgcgtattctcatcatgatgtgattggctgtatgtcttggaccggcaatctacttgacatagaacaattcgaaattggaggac 20242409  T
Q  316 ttgac 320  Q
    |||||    
T  20242410 ttgac 20242414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 214 - 301
Target Start/End: Complemental strand, 20169428 - 20169341
Alignment:
Q  214 tggagaattgctcttgtgttgcatattcttatgatgctgacattggttgtatgtcttggactgggaacctagttgacatacaaaaatt 301  Q
    ||||||||||||||||  ||||||||||| |||||| ||  |||||||||||||||||||| || || |||  |||||||||| ||||    
T  20169428 tggagaattgctcttgccttgcatattctcatgatgatgggattggttgtatgtcttggaccggcaatctacgtgacatacaacaatt 20169341  T

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Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 217 - 296
Target Start/End: Original strand, 20300449 - 20300528
Alignment:
Q  217 agaattgctcttgtgttgcatattcttatgatgctgacattggttgtatgtcttggactgggaacctagttgacatacaa 296  Q
    |||||||||| || |||||  ||||| |||||||||  ||||||||||||||||||||| |||| ||| |||| ||||||    
T  20300449 agaattgctcatgcgttgcgaattctcatgatgctggaattggttgtatgtcttggactaggaatctaattgatatacaa 20300528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 214 - 296
Target Start/End: Complemental strand, 20063902 - 20063820
Alignment:
Q  214 tggagaattgctcttgtgttgcatattcttatgatgctgacattggttgtatgtcttggactgggaacctagttgacatacaa 296  Q
    ||||||||||||||||   ||| || ||| | |||||||  |||||||||||| |||||||||||||| || |||||||||||    
T  20063902 tggagaattgctcttgcactgcgtactctaacgatgctgggattggttgtatgacttggactgggaacttacttgacatacaa 20063820  T

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Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 219 - 354
Target Start/End: Original strand, 20293322 - 20293457
Alignment:
Q  219 aattgctcttgtgttgcatattcttatgatgctgacattggttgtatgtcttggactgggaacctagttgacatacaaaaattctcaaatggaggacttg 318  Q
    |||||||| ||  |||| |||||| ||||| |||  ||||| ||||||||||||||||| || ||| ||||||||||  || ||  || ||||||||| |    
T  20293322 aattgctcctgcattgcgtattctcatgattctgggattggctgtatgtcttggactggaaatctacttgacatacatcaactccaaagtggaggactcg 20293421  T
Q  319 acttgtatattcgtgtagcacacacagaacttggta 354  Q
    |  | ||| ||||||||||  || ||||||||||||    
T  20293422 atctatatgttcgtgtagcctacgcagaacttggta 20293457  T

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Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 166
Target Start/End: Original strand, 20302431 - 20302477
Alignment:
Q  120 gatggttttttgaaactgccgatggtcaaagttcccgattttgcaga 166  Q
    ||||| ||||||||| ||| |||||| ||||||||||||||||||||    
T  20302431 gatgggtttttgaaattgcagatggttaaagttcccgattttgcaga 20302477  T

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Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 319
Target Start/End: Original strand, 20278254 - 20278359
Alignment:
Q  214 tggagaattgctcttgtgttgcatattcttatgatgctgacattggttgtatgtcttggactgggaacctagttgacatacaaaaattctcaaatggagg 313  Q
    |||||||||| |||||  ||||||||||  ||||| | |  ||||| |||||||| ||||| ||||| ||| ||||||||||| || ||  || ||||||    
T  20278254 tggagaattgttcttgccttgcatattcccatgattccgtgattggctgtatgtcgtggacagggaaactacttgacatacaacaactcgaaagtggagg 20278353  T
Q  314 acttga 319  Q
    ||||||    
T  20278354 acttga 20278359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 319
Target Start/End: Original strand, 20282833 - 20282938
Alignment:
Q  214 tggagaattgctcttgtgttgcatattcttatgatgctgacattggttgtatgtcttggactgggaacctagttgacatacaaaaattctcaaatggagg 313  Q
    |||||||||| |||||  ||||||||||  ||||| | |  ||||| |||||||| ||||| ||||| ||| ||||||||||| || ||  || ||||||    
T  20282833 tggagaattgttcttgccttgcatattcccatgattccgtgattggctgtatgtcgtggacagggaaactacttgacatacaacaactccaaagtggagg 20282932  T
Q  314 acttga 319  Q
    ||||||    
T  20282933 acttga 20282938  T

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Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 319
Target Start/End: Original strand, 20302519 - 20302624
Alignment:
Q  214 tggagaattgctcttgtgttgcatattcttatgatgctgacattggttgtatgtcttggactgggaacctagttgacatacaaaaattctcaaatggagg 313  Q
    ||||||||||||||||   |||||| ||  | |||||||  ||||| || |||||||||||||||||  || ||||||||||| || ||  || ||||||    
T  20302519 tggagaattgctcttgcactgcatactccaacgatgctgggattggctgcatgtcttggactgggaatttacttgacatacaacaactcgaaagtggagg 20302618  T
Q  314 acttga 319  Q
    ||||||    
T  20302619 acttga 20302624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 255 - 354
Target Start/End: Complemental strand, 40825151 - 40825051
Alignment:
Q  255 attggttgtatgtcttggactgggaacctagttgacatacaa-aaattctcaaatggaggacttgacttgtatattcgtgtagcacacacagaacttggt 353  Q
    ||||||||||||||||||||||| || ||| |||| |||||| ||||||| |||||||||||||||  | ||| ||||||||||  |  |||||||||||    
T  40825151 attggttgtatgtcttggactggcaatctaattgatatacaacaaattctaaaatggaggacttgatctatatgttcgtgtagcctatgcagaacttggt 40825052  T
Q  354 a 354  Q
    |    
T  40825051 a 40825051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 209 - 295
Target Start/End: Complemental strand, 40820529 - 40820443
Alignment:
Q  209 atgtctggagaattgctcttgtgttgcatattcttatgatgctgacattggttgtatgtcttggactgggaacctagttgacataca 295  Q
    ||||||| | |||||||| || ||||| |||||| ||||| |||  ||||| |||||||||||||||||||| ||| ||||||||||    
T  40820529 atgtctgcacaattgctcctgcgttgcgtattctcatgattctgggattggctgtatgtcttggactgggaatctacttgacataca 40820443  T

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