View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3023_high_9 (Length: 242)
Name: NF3023_high_9
Description: NF3023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3023_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 27771833 - 27771609
Alignment:
| Q |
1 |
cgccgcgaaaattgtcaagtttcaacctttggtttagatgatgctcaaataaaatccattgcagtttttagctacaaaaaaggagatgctttttt-agta |
99 |
Q |
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| T |
27771833 |
cgccgcgaaaattgtcaagtttcaacctttggtttagatgatgctcaaataaaatccattgcagtttttagctacaaaaaaggagatgctttttttagta |
27771734 |
T |
|
| Q |
100 |
ctactgtcacagattgttcagtttgtctaagtgagtttcaagatgatgaaagtgttagacttttaccaatgtgtaaccatgtttttcatcttccttgtat |
199 |
Q |
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| T |
27771733 |
ctactgtcacagattgttcagtttgtctaagtgagtttcaagatgatgaaagtgttagacttttaccaatgtgtaaccatgtttttcatcttccttgtat |
27771634 |
T |
|
| Q |
200 |
tgatacatggcttaaatctaactct |
224 |
Q |
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||||||||||||||||||||||||| |
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| T |
27771633 |
tgatacatggcttaaatctaactct |
27771609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 108 - 213
Target Start/End: Complemental strand, 37504182 - 37504077
Alignment:
| Q |
108 |
acagattgttcagtttgtctaagtgagtttcaagatgatgaaagtgttagacttttaccaatgtgtaaccatgtttttcatcttccttgtattgatacat |
207 |
Q |
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| T |
37504182 |
acagagtgttctgtttgtctaggtgaatttcaagaggaagagagtctcagaattttgcctaagtgtagccacgcttttcatatcccttgtattgatactt |
37504083 |
T |
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| Q |
208 |
ggctta |
213 |
Q |
| |
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|||||| |
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| T |
37504082 |
ggctta |
37504077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 108 - 218
Target Start/End: Complemental strand, 12617922 - 12617812
Alignment:
| Q |
108 |
acagattgttcagtttgtctaagtgagtttcaagatgatgaaagtgttagacttttaccaatgtgtaaccatgtttttcatcttccttgtattgatacat |
207 |
Q |
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||||||||||| |||||||||| ||||||||||| ||||| ||| ||||||||||||| | |||| ||||| |||||||||||||||||||||||||| |
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| T |
12617922 |
acagattgttctgtttgtctaaacgagtttcaagacgatgagagtattagacttttacctaaatgtagccatgcttttcatcttccttgtattgatacat |
12617823 |
T |
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| Q |
208 |
ggcttaaatct |
218 |
Q |
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|||| |||||| |
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| T |
12617822 |
ggctcaaatct |
12617812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 109 - 213
Target Start/End: Complemental strand, 37227965 - 37227861
Alignment:
| Q |
109 |
cagattgttcagtttgtctaagtgagtttcaagatgatgaaagtgttagacttttaccaatgtgtaaccatgtttttcatcttccttgtattgatacatg |
208 |
Q |
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|||||||||| |||||| | ||||||||| |||| ||||| | | |||||||||| |||| ||||||||||| ||||||| | |||||||||||||| || |
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| T |
37227965 |
cagattgttctgtttgtttgagtgagtttgaagaagatgagaatcttagacttttgccaaagtgtaaccatgcttttcatttaccttgtattgatacttg |
37227866 |
T |
|
| Q |
209 |
gctta |
213 |
Q |
| |
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||||| |
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|
| T |
37227865 |
gctta |
37227861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 213
Target Start/End: Original strand, 1867028 - 1867112
Alignment:
| Q |
129 |
agtgagtttcaagatgatgaaagtgttagacttttaccaatgtgtaaccatgtttttcatcttccttgtattgatacatggctta |
213 |
Q |
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||||||||| |||| ||||| | | ||||||||||||| | |||| | |||| ||||||| | | |||||||||||| ||||||| |
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| T |
1867028 |
agtgagtttgaagaagatgagaatcttagacttttacctaagtgtcatcatgcttttcatttactttgtattgatacttggctta |
1867112 |
T |
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