View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3023_low_1 (Length: 775)
Name: NF3023_low_1
Description: NF3023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3023_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 401; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 20 - 444
Target Start/End: Complemental strand, 2505074 - 2504650
Alignment:
| Q |
20 |
ctgtggaatgagagtctggtcttgaatactttcttttcttaataccatccaagcagtgaaaaccacagctagtggtacttgaactgatgagctaatccag |
119 |
Q |
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| T |
2505074 |
ctgtggtatgagagtctggtcttgaatactttcttttcttaataccatccaagcagtgaaaaccacagctagtggtacttgaactgatgagataatccag |
2504975 |
T |
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| Q |
120 |
taccctacaccgcatggttccattggaatgatctgcagagtttgaacaatattgcatcagagaatgtttcatcaaatgtatgcaatatatgaaaagacga |
219 |
Q |
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| T |
2504974 |
tatcctacaccgcatggttccattggaatgatctgcagagtttgaacaatattgcatcagagaatggttcatcaaatgtatgcaatatatgaaaagacga |
2504875 |
T |
|
| Q |
220 |
tatataagaatcaaaagtagaagactagcacggataggataactcaaatggttcgaatcaagtgttaaagaagaagttgaagaagttaaaaggttacagt |
319 |
Q |
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| T |
2504874 |
tatataagaatcaaaagtagaagactagcaaggataggataactcaaatggttcgaatcaagtgttaaagaagaagttgaagaagttaaaaggttagagt |
2504775 |
T |
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| Q |
320 |
ttaaaccctagtgaagtagaaaatattgatatagcaaatactatactaggaccaagttggttgacagaagcattagttaagggactgaaatgtaaggaat |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2504774 |
ttaaaccctagtgaagtagaaaatattgatatagcaaatactatactaggaccaagttggttgacagaagcattagttaagggactgaaatgtaaggaat |
2504675 |
T |
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| Q |
420 |
attaatattaattagttatgagatt |
444 |
Q |
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| T |
2504674 |
attaatattaattagttatgagatt |
2504650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 220; E-Value: 1e-120
Query Start/End: Original strand, 509 - 758
Target Start/End: Complemental strand, 2504587 - 2504341
Alignment:
| Q |
509 |
gtacaagatcaaagtgccttatacagtacaataatagtacatgatcaacactagtcattattaaaaaagacagtttccaaatctagcaaagcttttggat |
608 |
Q |
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|||||||||||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2504587 |
gtacaagatcaaagtgccttatgcagtacaata---gtacaggatcaacactagtcattattaaaaaagacagtttccaaatctagcaaagcttttggat |
2504491 |
T |
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| Q |
609 |
tctgtactacactatctattgatcttttggatctactacctcttcctccttatttgtgatggattagtaaccactaatcagcatggcttgtctctatctg |
708 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2504490 |
tctgtactacactatctattgatcttttggatctactacctcttcctccttatttgtgatggattagtaaccactaatcagcatggcttgtctctatctg |
2504391 |
T |
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| Q |
709 |
attattatagtaaaacaataatctaatgcccacttttccaccataattgt |
758 |
Q |
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|||||||||||||| |||| |||||||||||||||||||||||||||||| |
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| T |
2504390 |
attattatagtaaaccaatgatctaatgcccacttttccaccataattgt |
2504341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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