View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3023_low_13 (Length: 277)
Name: NF3023_low_13
Description: NF3023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3023_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 39 - 260
Target Start/End: Original strand, 24068173 - 24068394
Alignment:
| Q |
39 |
tgttaaatacattgtataagctagtagaagctattactattgctgactcatatacatgagtgacacgtgtattgagtatataatgaatgaatacagtgat |
138 |
Q |
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| T |
24068173 |
tgttaaatatagtgtataagctagttgaacctatttctattgctgactcatatacatgagtgacacgtgcattgagtatataatgaatgaatacagtgat |
24068272 |
T |
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| Q |
139 |
gcattttagagctcactgaatattattttctgttattcagatctaacaaactcttctctctctatcattgtgagtgtgtgagtatagtgcagtgaagcac |
238 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
24068273 |
gcaaattagagctcactgaatattattttctgttattcagatctaacaaactcttctctctttatcattgtgagtgtgtgagtatagtgcagtgaagcac |
24068372 |
T |
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| Q |
239 |
tcaagctccaacaaatggtatc |
260 |
Q |
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||||||||||||| |||||||| |
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| T |
24068373 |
tcaagctccaacatatggtatc |
24068394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 38 - 251
Target Start/End: Original strand, 24072680 - 24072892
Alignment:
| Q |
38 |
gtgttaaatacattgtataagctagtagaagctattactattgctgactcatatacatgagtgacacgtgtattgagtatataatgaatgaatacagtga |
137 |
Q |
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|||||||||| | ||||||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | |
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| T |
24072680 |
gtgttaaatatagtgtataagctagttgaacctatttctattgctgactcatatacatgagtgacacgtgtattgcgtatataatgaatgaatacagt-a |
24072778 |
T |
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| Q |
138 |
tgcattttagagctcactgaatattattttctgttattcagatctaacaaactcttctctctctatcattgtgagtgtgtgagtatagtgcagtgaagca |
237 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
24072779 |
tgcaaattagagctcactgaatattattttctgttattcagatctaacaaactcttctctcattatcattgtgagtgtgtgagtatagtgcagtgaagca |
24072878 |
T |
|
| Q |
238 |
ctcaagctccaaca |
251 |
Q |
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|||||||||||||| |
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| T |
24072879 |
ctcaagctccaaca |
24072892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 181; Significance: 7e-98; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 39 - 251
Target Start/End: Original strand, 50463462 - 50463674
Alignment:
| Q |
39 |
tgttaaatacattgtataagctagtagaagctattactattgctgactcatatacatgagtgacacgtgtattgagtatataatgaatgaatacagtgat |
138 |
Q |
| |
|
||||||||||| |||| |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50463462 |
tgttaaatacagtgtacaagctagttgaacctattactattgctgactcatatacatgagtgacacgtgtattgagtatataatgaatgaatacagtgat |
50463561 |
T |
|
| Q |
139 |
gcattttagagctcactgaatattattttctgttattcagatctaacaaactcttctctctctatcattgtgagtgtgtgagtatagtgcagtgaagcac |
238 |
Q |
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||| |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50463562 |
gcaaattagagctcactgaatattattttttgttgttcagatctaacaaactcttctctctctatcattgtgagtgtgtgagtatagtgcagtgaagcac |
50463661 |
T |
|
| Q |
239 |
tcaagctccaaca |
251 |
Q |
| |
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||||||||||||| |
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| T |
50463662 |
tcaagctccaaca |
50463674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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