View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3023_low_16 (Length: 249)

Name: NF3023_low_16
Description: NF3023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3023_low_16
NF3023_low_16
[»] chr7 (11 HSPs)
chr7 (1-105)||(8839507-8839611)
chr7 (109-178)||(8839370-8839439)
chr7 (109-178)||(13254190-13254259)
chr7 (109-178)||(29059788-29059857)
chr7 (186-229)||(8839236-8839279)
chr7 (124-178)||(31492101-31492155)
chr7 (109-178)||(19477338-19477407)
chr7 (110-175)||(40099364-40099429)
chr7 (109-178)||(28537373-28537442)
chr7 (109-175)||(21747132-21747197)
chr7 (109-174)||(46373656-46373721)
[»] chr5 (2 HSPs)
chr5 (109-178)||(10591910-10591979)
chr5 (109-178)||(28023532-28023601)
[»] chr4 (8 HSPs)
chr4 (109-178)||(31307155-31307224)
chr4 (109-178)||(45994505-45994574)
chr4 (109-178)||(14854588-14854657)
chr4 (109-178)||(38766072-38766141)
chr4 (109-176)||(35972326-35972393)
chr4 (109-178)||(11140440-11140509)
chr4 (109-178)||(13686584-13686653)
chr4 (109-173)||(10199198-10199262)
[»] chr2 (10 HSPs)
chr2 (109-178)||(5394380-5394449)
chr2 (109-178)||(42745205-42745274)
chr2 (109-178)||(44732662-44732731)
chr2 (108-178)||(18105451-18105521)
chr2 (109-178)||(37568816-37568885)
chr2 (109-178)||(12133319-12133388)
chr2 (109-178)||(31579318-31579387)
chr2 (109-170)||(993737-993798)
chr2 (109-178)||(9438225-9438294)
chr2 (109-178)||(28365932-28366001)
[»] chr8 (7 HSPs)
chr8 (117-178)||(2743924-2743985)
chr8 (117-178)||(13468834-13468895)
chr8 (109-178)||(36994589-36994658)
chr8 (109-178)||(30935987-30936056)
chr8 (111-178)||(19715815-19715882)
chr8 (109-178)||(44705655-44705724)
chr8 (109-161)||(39086801-39086853)
[»] chr3 (7 HSPs)
chr3 (109-172)||(30996060-30996123)
chr3 (109-171)||(25224682-25224744)
chr3 (109-178)||(48204400-48204469)
chr3 (109-178)||(27763706-27763773)
chr3 (109-175)||(38088618-38088684)
chr3 (109-170)||(46604657-46604718)
chr3 (109-161)||(38331111-38331163)
[»] scaffold0182 (1 HSPs)
scaffold0182 (127-178)||(26332-26383)
[»] chr6 (5 HSPs)
chr6 (108-178)||(12411130-12411200)
chr6 (132-178)||(21029072-21029118)
chr6 (109-178)||(423638-423707)
chr6 (109-178)||(21910188-21910257)
chr6 (109-185)||(5944825-5944901)
[»] chr1 (4 HSPs)
chr1 (109-186)||(28724656-28724732)
chr1 (109-175)||(16756065-16756131)
chr1 (109-162)||(14500363-14500416)
chr1 (109-178)||(22022103-22022172)
[»] scaffold0009 (1 HSPs)
scaffold0009 (117-173)||(32358-32414)


Alignment Details
Target: chr7 (Bit Score: 93; Significance: 2e-45; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 8839611 - 8839507
Alignment:
Q  1 cttttattgttgaaaaccattcaagttaattaatactcattccgtcctaaattatacgtcgttttaaaaataaaagtttcaaattatatgtcacattaca 100  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||    
T  8839611 cttttattgttgaaaaccattcaagttaattaatactcgttccgtcctaaattataagtcgttttaaaaataaaagtctcaaattatatgtcacattaca 8839512  T
Q  101 atatt 105  Q
    |||||    
T  8839511 atatt 8839507  T

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Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 109 - 178
Target Start/End: Complemental strand, 8839439 - 8839370
Alignment:
Q  109 aagagcgcttagataagatggagcgggtctcttttaggttaaccaaggtcctggattcgaatccagcctt 178  Q
    |||||||||||||| ||||| | |||||||||| ||| |||||||||||||||| |||||||||||||||    
T  8839439 aagagcgcttagatgagatgaaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagcctt 8839370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 109 - 178
Target Start/End: Complemental strand, 13254259 - 13254190
Alignment:
Q  109 aagagcgcttagataagatggagcgggtctcttttaggttaaccaaggtcctggattcgaatccagcctt 178  Q
    |||||||||||||| ||||||| |||||||||| ||| |||||||||||||||  |||||||||||||||    
T  13254259 aagagcgcttagatgagatggaacgggtctcttctagcttaaccaaggtcctgagttcgaatccagcctt 13254190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 109 - 178
Target Start/End: Original strand, 29059788 - 29059857
Alignment:
Q  109 aagagcgcttagataagatggagcgggtctcttttaggttaaccaaggtcctggattcgaatccagcctt 178  Q
    |||||| ||||||| ||||||| |||||||||| ||| |||||||||||||||| |||||||||||||||    
T  29059788 aagagcacttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagcctt 29059857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 186 - 229
Target Start/End: Complemental strand, 8839279 - 8839236
Alignment:
Q  186 cgcggagatacccggtttataccaaaaaactttctcttctttta 229  Q
    |||||||||||||| |||||||||||||||||||||||||||||    
T  8839279 cgcggagatacccgatttataccaaaaaactttctcttctttta 8839236  T

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Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 124 - 178
Target Start/End: Original strand, 31492101 - 31492155
Alignment:
Q  124 agatggagcgggtctcttttaggttaaccaaggtcctggattcgaatccagcctt 178  Q
    ||||||| |||||||||| ||| |||||||||||||||| |||||||||||||||    
T  31492101 agatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagcctt 31492155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 109 - 178
Target Start/End: Complemental strand, 19477407 - 19477338
Alignment:
Q  109 aagagcgcttagataagatggagcgggtctcttttaggttaaccaaggtcctggattcgaatccagcctt 178  Q
    ||||||| |||||| ||||||| |||||||||| ||| ||||||||||| |||| || ||||||||||||    
T  19477407 aagagcgtttagatgagatggaacgggtctcttctagcttaaccaaggttctgggtttgaatccagcctt 19477338  T

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Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 110 - 175
Target Start/End: Complemental strand, 40099429 - 40099364
Alignment:
Q  110 agagcgcttagataagatggagcgggtctcttttaggttaaccaaggtcctggattcgaatccagc 175  Q
    ||||||||||||| ||||||| |||||||||| ||| ||||| ||| ||||| |||||||||||||    
T  40099429 agagcgcttagatgagatggaacgggtctcttctagcttaactaagatcctgaattcgaatccagc 40099364  T

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Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 109 - 178
Target Start/End: Original strand, 28537373 - 28537442
Alignment:
Q  109 aagagcgcttagataagatggagcgggtctcttttaggttaaccaaggtcctggattcgaatccagcctt 178  Q
    |||||||||||||| ||||||| |||||||||| ||  |||| ||||||  ||| |||||||||||||||    
T  28537373 aagagcgcttagatgagatggaacgggtctcttctaacttaatcaaggttttgggttcgaatccagcctt 28537442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 175
Target Start/End: Complemental strand, 21747197 - 21747132
Alignment:
Q  109 aagagcgcttagataagatggagcgggtctcttttaggttaaccaaggtcctggattcgaatccagc 175  Q
    ||||||| |||||| ||||||| |||||||||| ||  ||||||||||||||||  |||||||||||    
T  21747197 aagagcgtttagatgagatggaacgggtctcttctaacttaaccaaggtcctgg-gtcgaatccagc 21747132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 109 - 174
Target Start/End: Original strand, 46373656 - 46373721
Alignment:
Q  109 aagagcgcttagataagatggagcgggtctcttttaggttaaccaaggtcctggattcgaatccag 174  Q
    |||||| ||||||| |||||  ||||||||||| ||| |||| |||| |||||| |||||||||||    
T  46373656 aagagctcttagatgagatgacgcgggtctcttctagcttaagcaagatcctgggttcgaatccag 46373721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 109 - 178
Target Start/End: Original strand, 10591910 - 10591979
Alignment:
Q  109 aagagcgcttagataagatggagcgggtctcttttaggttaaccaaggtcctggattcgaatccagcctt 178  Q
    |||||| ||||||| ||||||| |||||||||| ||| |||||||||||||||| |||||||||||||||    
T  10591910 aagagcacttagatgagatggaacgggtctcttctagattaaccaaggtcctgggttcgaatccagcctt 10591979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 109 - 178
Target Start/End: Complemental strand, 28023601 - 28023532
Alignment:
Q  109 aagagcgcttagataagatggagcgggtctcttttaggttaaccaaggtcctggattcgaatccagcctt 178  Q
    |||||||||||||| ||||||| ||| |||||| ||| |||||||| ||||||  |||||||||||||||    
T  28023601 aagagcgcttagatgagatggaacggatctcttctagcttaaccaatgtcctgagttcgaatccagcctt 28023532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 109 - 178
Target Start/End: Complemental strand, 31307224 - 31307155
Alignment:
Q  109 aagagcgcttagataagatggagcgggtctcttttaggttaaccaaggtcctggattcgaatccagcctt 178  Q
    |||||| ||||||| ||||||| |||||||||| ||| |||||||||||||||| |||||||||||||||    
T  31307224 aagagcacttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagcctt 31307155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 109 - 178
Target Start/End: Original strand, 45994505 - 45994574
Alignment:
Q  109 aagagcgcttagataagatggagcgggtctcttttaggttaaccaaggtcctggattcgaatccagcctt 178  Q
    ||||||| |||||| ||||||| | |||||||| ||| ||||||||||||||||||||||||||||||||    
T  45994505 aagagcgtttagatgagatggaacaggtctcttctagcttaaccaaggtcctggattcgaatccagcctt 45994574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 109 - 178
Target Start/End: Original strand, 14854588 - 14854657
Alignment:
Q  109 aagagcgcttagataagatggagcgggtctcttttaggttaaccaaggtcctggattcgaatccagcctt 178  Q
    |||||||||||||| ||||||| ||| |||||| ||| ||||||||||| |||| |||||||||||||||    
T  14854588 aagagcgcttagatgagatggaacggttctcttctagcttaaccaaggttctgggttcgaatccagcctt 14854657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 109 - 178
Target Start/End: Original strand, 38766072 - 38766141
Alignment:
Q  109 aagagcgcttagataagatggagcgggtctcttttaggttaaccaaggtcctggattcgaatccagcctt 178  Q
    |||||||||||||| ||||||| || ||||||| ||| |||||||||||||||| || ||||||||||||    
T  38766072 aagagcgcttagatgagatggaacgagtctcttctagcttaaccaaggtcctgggtttgaatccagcctt 38766141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 109 - 176
Target Start/End: Original strand, 35972326 - 35972393
Alignment:
Q  109 aagagcgcttagataagatggagcgggtctcttttaggttaaccaaggtcctggattcgaatccagcc 176  Q
    |||||||||||||| ||||||| |||| ||||| ||| |||||||||||| ||| |||||||||||||    
T  35972326 aagagcgcttagatgagatggaacgggcctcttctagcttaaccaaggtcttgggttcgaatccagcc 35972393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 109 - 178
Target Start/End: Original strand, 11140440 - 11140509
Alignment:
Q  109 aagagcgcttagataagatggagcgggtctcttttaggttaaccaaggtcctggattcgaatccagcctt 178  Q
    |||||||||||||||||||    ||| | |||| ||| |||||||||||||||| |||||||||||||||    
T  11140440 aagagcgcttagataagataacacggctatcttctagcttaaccaaggtcctggtttcgaatccagcctt 11140509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 109 - 178
Target Start/End: Original strand, 13686584 - 13686653
Alignment:
Q  109 aagagcgcttagataagatggagcgggtctcttttaggttaaccaaggtcctggattcgaatccagcctt 178  Q
    |||||||||||||| ||||||   ||||||||| | | |||||||||||||||| |||||||||| ||||    
T  13686584 aagagcgcttagatgagatggcatgggtctcttcttgcttaaccaaggtcctgggttcgaatccatcctt 13686653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 173
Target Start/End: Complemental strand, 10199262 - 10199198
Alignment:
Q  109 aagagcgcttagataagatggagcgggtctcttttaggttaaccaaggtcctggattcgaatcca 173  Q
    ||||| |||||||| ||||||| |||||||||| ||  |||||||||||| ||  ||||||||||    
T  10199262 aagagtgcttagatgagatggaacgggtctcttataacttaaccaaggtcttgtgttcgaatcca 10199198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 109 - 178
Target Start/End: Original strand, 5394380 - 5394449
Alignment:
Q  109 aagagcgcttagataagatggagcgggtctcttttaggttaaccaaggtcctggattcgaatccagcctt 178  Q
    |||||||||||||| ||||||| || ||||||| ||| |||||||||||||||| |||||||||||||||    
T  5394380 aagagcgcttagatgagatggaacgagtctcttctagcttaaccaaggtcctgggttcgaatccagcctt 5394449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 109 - 178
Target Start/End: Complemental strand, 42745274 - 42745205
Alignment:
Q  109 aagagcgcttagataagatggagcgggtctcttttaggttaaccaaggtcctggattcgaatccagcctt 178  Q
    |||||||||||||| ||||||| |||||||||| ||| |||||||||||| ||| |||||||||||||||    
T  42745274 aagagcgcttagatgagatggaacgggtctcttatagcttaaccaaggtcttgggttcgaatccagcctt 42745205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 109 - 178
Target Start/End: Complemental strand, 44732731 - 44732662
Alignment:
Q  109 aagagcgcttagataagatggagcgggtctcttttaggttaaccaaggtcctggattcgaatccagcctt 178  Q
    |||||| ||||||| ||||||| |||||||||| ||| |||||||||||||||| |||||||||||||||    
T  44732731 aagagcacttagatgagatggaacgggtctcttatagcttaaccaaggtcctgggttcgaatccagcctt 44732662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 108 - 178
Target Start/End: Complemental strand, 18105521 - 18105451
Alignment:
Q  108 taagagcgcttagataagatggagcgggtctcttttaggttaaccaaggtcctggattcgaatccagcctt 178  Q
    |||||||||||| || ||||||| || ||||||| ||| |||||||||||||||| |||||||||||||||    
T  18105521 taagagcgcttatatgagatggaacgagtctcttctagcttaaccaaggtcctgggttcgaatccagcctt 18105451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 109 - 178
Target Start/End: Complemental strand, 37568885 - 37568816
Alignment:
Q  109 aagagcgcttagataagatggagcgggtctcttttaggttaaccaaggtcctggattcgaatccagcctt 178  Q
    |||||| ||||||| ||||||| ||||| |||| ||| |||||||||||||||| |||||||||||||||    
T  37568885 aagagcacttagatgagatggaacgggtttcttctagcttaaccaaggtcctgggttcgaatccagcctt 37568816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 109 - 178
Target Start/End: Complemental strand, 12133388 - 12133319
Alignment:
Q  109 aagagcgcttagataagatggagcgggtctcttttaggttaaccaaggtcctggattcgaatccagcctt 178  Q
    |||||||||||||| ||||||| || ||||||| ||| |||| ||||||| ||| |||||||||||||||    
T  12133388 aagagcgcttagatgagatggaacgagtctcttctagcttaatcaaggtcatgggttcgaatccagcctt 12133319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 109 - 178
Target Start/End: Complemental strand, 31579387 - 31579318
Alignment:
Q  109 aagagcgcttagataagatggagcgggtctcttttaggttaaccaaggtcctggattcgaatccagcctt 178  Q
    |||||| ||||||| ||||| | |||||||||| ||| |||| ||||||| ||| |||||||||||||||    
T  31579387 aagagcacttagatgagatgtaacgggtctcttctagcttaatcaaggtcttgggttcgaatccagcctt 31579318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 109 - 170
Target Start/End: Original strand, 993737 - 993798
Alignment:
Q  109 aagagcgcttagataagatggagcgggtctcttttaggttaaccaaggtcctggattcgaat 170  Q
    |||||||||||||| |||||   || ||||||| ||| |||||||||||||||| |||||||    
T  993737 aagagcgcttagatgagatgacacgtgtctcttatagcttaaccaaggtcctgggttcgaat 993798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 109 - 178
Target Start/End: Complemental strand, 9438294 - 9438225
Alignment:
Q  109 aagagcgcttagataagatggagcgggtctcttttaggttaaccaaggtcctggattcgaatccagcctt 178  Q
    ||||||| |||||| ||||||| ||  |||||||||| |||||||| ||| | | |||||||||||||||    
T  9438294 aagagcgtttagatgagatggaacgaatctcttttagcttaaccaaagtctttggttcgaatccagcctt 9438225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 109 - 178
Target Start/End: Original strand, 28365932 - 28366001
Alignment:
Q  109 aagagcgcttagataagatggagcgggtctcttttaggttaaccaaggtcctggattcgaatccagcctt 178  Q
    |||||||||||||| ||||||| || ||||||| ||  |||||||||||| ||  ||||||| |||||||    
T  28365932 aagagcgcttagatgagatggaacgcgtctcttctaacttaaccaaggtcgtgagttcgaatgcagcctt 28366001  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 117 - 178
Target Start/End: Original strand, 2743924 - 2743985
Alignment:
Q  117 ttagataagatggagcgggtctcttttaggttaaccaaggtcctggattcgaatccagcctt 178  Q
    |||||| ||||||| |||||||||| ||| |||||||||||||||| |||||||||||||||    
T  2743924 ttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagcctt 2743985  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 117 - 178
Target Start/End: Complemental strand, 13468895 - 13468834
Alignment:
Q  117 ttagataagatggagcgggtctcttttaggttaaccaaggtcctggattcgaatccagcctt 178  Q
    |||||| ||||||| |||||||||| ||| |||||||||||||||| |||||||||||||||    
T  13468895 ttagattagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagcctt 13468834  T

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Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 109 - 178
Target Start/End: Complemental strand, 36994658 - 36994589
Alignment:
Q  109 aagagcgcttagataagatggagcgggtctcttttaggttaaccaaggtcctggattcgaatccagcctt 178  Q
    |||||||||||||||||||||  |  ||||||| ||| |||||||||||||||| |||||||||||||||    
T  36994658 aagagcgcttagataagatggcacatgtctcttctagtttaaccaaggtcctgggttcgaatccagcctt 36994589  T

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Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 109 - 178
Target Start/End: Original strand, 30935987 - 30936056
Alignment:
Q  109 aagagcgcttagataagatggagcgggtctcttttaggttaaccaaggtcctggattcgaatccagcctt 178  Q
    |||||| ||||||| ||||||| |||||||||| ||  |||||||||||||||  |||||||||||||||    
T  30935987 aagagcacttagatgagatggaacgggtctcttctaacttaaccaaggtcctgagttcgaatccagcctt 30936056  T

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Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 111 - 178
Target Start/End: Complemental strand, 19715882 - 19715815
Alignment:
Q  111 gagcgcttagataagatggagcgggtctcttttaggttaaccaaggtcctggattcgaatccagcctt 178  Q
    |||||||||||| ||||||| |  |||| || ||| |||||||||||||||| |||||||||||||||    
T  19715882 gagcgcttagatgagatggaacatgtcttttctagcttaaccaaggtcctgggttcgaatccagcctt 19715815  T

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Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 109 - 178
Target Start/End: Original strand, 44705655 - 44705724
Alignment:
Q  109 aagagcgcttagataagatggagcgggtctcttttaggttaaccaaggtcctggattcgaatccagcctt 178  Q
    ||||||| ||||||  |||||| | |||||||| ||| |||||||||||| ||| |||||||||||||||    
T  44705655 aagagcgtttagatgggatggaacaggtctcttctagtttaaccaaggtcttgggttcgaatccagcctt 44705724  T

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Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 161
Target Start/End: Original strand, 39086801 - 39086853
Alignment:
Q  109 aagagcgcttagataagatggagcgggtctcttttaggttaaccaaggtcctg 161  Q
    |||||||||||||| ||||||| |||| ||||| ||| |||||||||||||||    
T  39086801 aagagcgcttagatgagatggaacgggcctcttctagcttaaccaaggtcctg 39086853  T

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Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 109 - 172
Target Start/End: Complemental strand, 30996123 - 30996060
Alignment:
Q  109 aagagcgcttagataagatggagcgggtctcttttaggttaaccaaggtcctggattcgaatcc 172  Q
    |||||||||||||| ||||||| |||||||||| ||  |||||||||||||||| |||||||||    
T  30996123 aagagcgcttagatgagatggaacgggtctcttctatcttaaccaaggtcctgggttcgaatcc 30996060  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 109 - 171
Target Start/End: Original strand, 25224682 - 25224744
Alignment:
Q  109 aagagcgcttagataagatggagcgggtctcttttaggttaaccaaggtcctggattcgaatc 171  Q
    |||||||||||||| ||||| | |||||||||| ||| |||||||||||||||| ||||||||    
T  25224682 aagagcgcttagatgagatgaaacgggtctcttctagcttaaccaaggtcctgggttcgaatc 25224744  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 109 - 178
Target Start/End: Complemental strand, 48204469 - 48204400
Alignment:
Q  109 aagagcgcttagataagatggagcgggtctcttttaggttaaccaaggtcctggattcgaatccagcctt 178  Q
    ||||| |||||||| ||||||| || ||||||| ||| |||||||||||| ||| |||||||||||||||    
T  48204469 aagagtgcttagatgagatggaacgagtctcttctagcttaaccaaggtcttgggttcgaatccagcctt 48204400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 109 - 178
Target Start/End: Original strand, 27763706 - 27763773
Alignment:
Q  109 aagagcgcttagataagatggagcgggtctcttttaggttaaccaaggtcctggattcgaatccagcctt 178  Q
    |||||||||||||| |||| || |||||||| |  || |||||||||||||||| |||||||||||||||    
T  27763706 aagagcgcttagatgagatagaacgggtctcct--agcttaaccaaggtcctgggttcgaatccagcctt 27763773  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 175
Target Start/End: Original strand, 38088618 - 38088684
Alignment:
Q  109 aagagcgcttagataagatggagcgggtctcttttaggttaaccaaggtcctggattcgaatccagc 175  Q
    |||||||||||||| ||||| | |||||||||| ||| ||||||||||| |  | ||||||||||||    
T  38088618 aagagcgcttagatgagatgaaacgggtctcttctagcttaaccaaggttccaggttcgaatccagc 38088684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 109 - 170
Target Start/End: Complemental strand, 46604718 - 46604657
Alignment:
Q  109 aagagcgcttagataagatggagcgggtctcttttaggttaaccaaggtcctggattcgaat 170  Q
    |||||||||||||| ||||||| || ||||||| ||  ||||||||||| |||| |||||||    
T  46604718 aagagcgcttagatgagatggaacgagtctcttataacttaaccaaggttctgggttcgaat 46604657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 161
Target Start/End: Original strand, 38331111 - 38331163
Alignment:
Q  109 aagagcgcttagataagatggagcgggtctcttttaggttaaccaaggtcctg 161  Q
    |||||||||||||| ||||||| |||||||||| ||  |||||||| ||||||    
T  38331111 aagagcgcttagatgagatggatcgggtctcttctaacttaaccaatgtcctg 38331163  T

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Target: scaffold0182 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 127 - 178
Target Start/End: Original strand, 26332 - 26383
Alignment:
Q  127 tggagcgggtctcttttaggttaaccaaggtcctggattcgaatccagcctt 178  Q
    |||| |||||||||| ||| |||||||||||||||| |||||||||||||||    
T  26332 tggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagcctt 26383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 108 - 178
Target Start/End: Original strand, 12411130 - 12411200
Alignment:
Q  108 taagagcgcttagataagatggagcgggtctcttttaggttaaccaaggtcctggattcgaatccagcctt 178  Q
    |||||| |||||||| ||||||| | |||||||| ||  |||||||||||||||  |||||||||||||||    
T  12411130 taagagtgcttagatgagatggaacaggtctcttctaacttaaccaaggtcctgagttcgaatccagcctt 12411200  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 178
Target Start/End: Complemental strand, 21029118 - 21029072
Alignment:
Q  132 cgggtctcttttaggttaaccaaggtcctggattcgaatccagcctt 178  Q
    |||||||||| ||| |||||||||||| ||| |||||||||||||||    
T  21029118 cgggtctcttctagcttaaccaaggtcttgggttcgaatccagcctt 21029072  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 109 - 178
Target Start/End: Original strand, 423638 - 423707
Alignment:
Q  109 aagagcgcttagataagatggagcgggtctcttttaggttaaccaaggtcctggattcgaatccagcctt 178  Q
    |||||||||||||| ||||||| | | |||||| ||| |||||||||||  ||| || ||||||||||||    
T  423638 aagagcgcttagatgagatggaacagatctcttctagtttaaccaaggttttgggtttgaatccagcctt 423707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 109 - 178
Target Start/End: Original strand, 21910188 - 21910257
Alignment:
Q  109 aagagcgcttagataagatggagcgggtctcttttaggttaaccaaggtcctggattcgaatccagcctt 178  Q
    ||||||| |||||| ||||| | |  ||||||| ||| ||||||||| |||||| |||||||||||||||    
T  21910188 aagagcgtttagatgagatgaaacaagtctcttctagcttaaccaagatcctgggttcgaatccagcctt 21910257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 185
Target Start/End: Original strand, 5944825 - 5944901
Alignment:
Q  109 aagagcgcttagataagatggagcgggtctcttttaggttaaccaaggtcctggattcgaatccagcctttaacatg 185  Q
    ||||| ||||| ||||||||   |||||||||||||  |||||||||||||||  ||||||| ||| |||| |||||    
T  5944825 aagagtgcttatataagatgatacgggtctcttttaacttaaccaaggtcctgagttcgaattcagtctttgacatg 5944901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 109 - 186
Target Start/End: Original strand, 28724656 - 28724732
Alignment:
Q  109 aagagcgcttagataagatggagcgggtctcttttaggttaaccaaggtcctggattcgaatccagcctttaacatgc 186  Q
    |||||||||||||| ||||||| || ||||||| ||| ||||  ||| |||||||||||||| ||||||| |||||||    
T  28724656 aagagcgcttagatgagatggaacgagtctcttctagcttaataaag-tcctggattcgaattcagccttgaacatgc 28724732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 175
Target Start/End: Original strand, 16756065 - 16756131
Alignment:
Q  109 aagagcgcttagataagatggagcgggtctcttttaggttaaccaaggtcctggattcgaatccagc 175  Q
    |||||||||||||| ||||||| ||| |||||| ||| ||||||||||| |||| || |||| ||||    
T  16756065 aagagcgcttagatgagatggaacggatctcttctagcttaaccaaggttctgggtttgaattcagc 16756131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 109 - 162
Target Start/End: Complemental strand, 14500416 - 14500363
Alignment:
Q  109 aagagcgcttagataagatggagcgggtctcttttaggttaaccaaggtcctgg 162  Q
    ||||| ||||||||  |||||| |||||||||| ||| ||||||||||||||||    
T  14500416 aagagtgcttagatgcgatggaacgggtctcttctagcttaaccaaggtcctgg 14500363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 109 - 178
Target Start/End: Original strand, 22022103 - 22022172
Alignment:
Q  109 aagagcgcttagataagatggagcgggtctcttttaggttaaccaaggtcctggattcgaatccagcctt 178  Q
    ||||||| |||||| ||||||| | |||||||| ||| ||||| |||||  ||| |||||||||||||||    
T  22022103 aagagcgtttagatgagatggaacaggtctcttctagcttaactaaggttgtgggttcgaatccagcctt 22022172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 173
Target Start/End: Complemental strand, 32414 - 32358
Alignment:
Q  117 ttagataagatggagcgggtctcttttaggttaaccaaggtcctggattcgaatcca 173  Q
    |||||||||||||| |||||||||| ||| || |||||||| |||| ||||||||||    
T  32414 ttagataagatggaacgggtctcttctagcttcaccaaggttctgggttcgaatcca 32358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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