View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3023_low_2 (Length: 569)
Name: NF3023_low_2
Description: NF3023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3023_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 491; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 1 - 565
Target Start/End: Original strand, 2854176 - 2854740
Alignment:
| Q |
1 |
accaaattcatctcccacctccacaactgtgccgaattgaacgcgacgctctccaccgccaccaccaataggggaatgagaaggggattttgtaccacga |
100 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| |||||||| |||| ||| ||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
2854176 |
accaaattcatctcccatctccacaactgtgccaaattgaacccgacactcctcaccgccaccaccaacaggggaatgagaaggggattttgtaccacga |
2854275 |
T |
|
| Q |
101 |
gggcttctaacagcagtagcagctgtttgtggagattttggtgtccaaattgcaccagtattaccataattgtttgtatgatgttcatcaaattgaacat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2854276 |
gggcttctaacagcagtagcagctgtttgtggagattttggtgtccaaattgcaccagtattaccataattgtttgtatgatgttcatcaaattgaacat |
2854375 |
T |
|
| Q |
201 |
taataggtctaatgcatctatatatcaagatgagaaaccaagatagccatggaattgcaaccaatgccatgcctgcaaagagataccatggtaaagattc |
300 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
2854376 |
taataggtctaatgcatctatatatcaagatgagaaaccaagatagccatggaattgcaaccaatgacatgcctgcaaagagataccatggtaaagattc |
2854475 |
T |
|
| Q |
301 |
agaatctggtaggaatatgtacatgcaaaggaaaattcctccttcattattttcttacaattcaatttcatctctgnnnnnnnnnngtacacctgacatt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
2854476 |
agaatctggtaggaatatgtacatgcaaaggaaaattcctccttcattattttcttacaattcaatttcatctctgaaaaaaaaaagtacacctgacatt |
2854575 |
T |
|
| Q |
401 |
tttaatctaaagataaattagtcattcattataatacaaagactagtttatttttagtatggaatgtcaatcattagttttagtattattttttagagaa |
500 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
2854576 |
tttaatctaaagataaattagtcattcattataatacaaagactaatttatttttagtatggaatgtcaatcattagttttagtattattttttacagaa |
2854675 |
T |
|
| Q |
501 |
atgttaacaaatgaccttaagatatttgtttagaagtttaaagtgaaaattttattttcaaaatt |
565 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2854676 |
atgttaacgaatgaccttaagatatttgtttagaagtttaaagtgaaaattttattttcaaaatt |
2854740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 343
Target Start/End: Original strand, 2906204 - 2906546
Alignment:
| Q |
1 |
accaaattcatctcccacctccacaactgtgccgaattgaacgcgacgctctccaccgccaccaccaataggggaatgagaaggggattttgtaccacga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
2906204 |
accaaattcatctcccacctccacaactgtgccgaattgaacacgacgctctccaccgccgccaccaacaggggaatgagaaggggattttgtaccacga |
2906303 |
T |
|
| Q |
101 |
gggcttctaacagcagtagcagctgtttgtggagattttggtgtccaaattgcaccagtattaccataattgtttgtatgatgttcatcaaattgaacat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2906304 |
gggcttctaacagcagtagcagctgtttgtggagattttggtgtccaaattgcaccagtattaccataattgtttgtatgatgttcatcaaattgaacat |
2906403 |
T |
|
| Q |
201 |
taataggtctaatgcatctatatatcaagatgagaaaccaagatagccatggaattgcaaccaatgccatgcctgcaaagagataccatggtaaagattc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2906404 |
taataggtctaatgcatctatatatcaagatgagaaaccaagatagccatggaattgcaaccaatgccatgcctgcaaagagataccatggtaaagattc |
2906503 |
T |
|
| Q |
301 |
agaatctggtaggaatatgtacatgcaaaggaaaattcctcct |
343 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2906504 |
agaatctggtaggaatatgtacatgcaaaggaaaattcctcct |
2906546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 499 - 558
Target Start/End: Complemental strand, 5221140 - 5221081
Alignment:
| Q |
499 |
aaatgttaacaaatgaccttaagatatttgtttagaagtttaaagtgaaaattttatttt |
558 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||||||||||||||| ||| |||||||| |
|
|
| T |
5221140 |
aaatgttaacaaatgtccttaagacatttgtttagaagtttaaagtaaaatatttatttt |
5221081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 529 - 565
Target Start/End: Original strand, 36178445 - 36178481
Alignment:
| Q |
529 |
tttagaagtttaaagtgaaaattttattttcaaaatt |
565 |
Q |
| |
|
||||||||||||||||||||||||||| || |||||| |
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|
| T |
36178445 |
tttagaagtttaaagtgaaaattttatcttaaaaatt |
36178481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 526 - 565
Target Start/End: Original strand, 44083991 - 44084030
Alignment:
| Q |
526 |
ttgtttagaagtttaaagtgaaaattttattttcaaaatt |
565 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
44083991 |
ttgtttagaagtttaaagtgaaaattttattttaaaaatt |
44084030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 528 - 565
Target Start/End: Original strand, 41983003 - 41983040
Alignment:
| Q |
528 |
gtttagaagtttaaagtgaaaattttattttcaaaatt |
565 |
Q |
| |
|
|||||||||||||||||||||||||||| || |||||| |
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|
| T |
41983003 |
gtttagaagtttaaagtgaaaattttatattgaaaatt |
41983040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 499 - 568
Target Start/End: Original strand, 8701010 - 8701079
Alignment:
| Q |
499 |
aaatgttaacaaatgaccttaagatatttgtttagaagtttaaagtgaaaattttattttcaaaattatg |
568 |
Q |
| |
|
|||||||||||| | |||||| || | ||||| ||||||||||| | |||||||||| || ||||||||| |
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|
| T |
8701010 |
aaatgttaacaagttaccttatgagacttgttaagaagtttaaaataaaaattttatcttaaaaattatg |
8701079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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