View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3023_low_21 (Length: 216)
Name: NF3023_low_21
Description: NF3023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3023_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 169; Significance: 8e-91; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 11 - 200
Target Start/End: Original strand, 6966326 - 6966515
Alignment:
| Q |
11 |
agaatatgagagcaaaagtcagaatttaatgtccatatcgcatattcatagtttaaaatctgcagaaggacggnnnnnnnggcttaggcttttgaattta |
110 |
Q |
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| T |
6966326 |
agaatatgagagcaaaagtcagaatttaatgtccatatcgcatattcatagtttaaaatctgcagaaggacggaaaaaatggcttaggcttttgaattta |
6966425 |
T |
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| Q |
111 |
taacttaatttttcttctttacacttgctattccacaggtttttggtaacagtgatgggtttggcaattccatggagcataacattgttc |
200 |
Q |
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| T |
6966426 |
taacttaatttttcttctttacacttgctattccacaggtttttggtaacagtgatgggtttggcaattccatggagcataacattgttc |
6966515 |
T |
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