View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3023_low_3 (Length: 458)
Name: NF3023_low_3
Description: NF3023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3023_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 1 - 441
Target Start/End: Complemental strand, 16961703 - 16961263
Alignment:
| Q |
1 |
aacattgaacctactccatatttaacactagtgtgctatgaagaaaatgttacacagttgcatgttgttggaaacaacaatgagtttacttcattgcctc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |||||||||| |
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| T |
16961703 |
aacattgaacctactccatatttaacactagtgtgctatgaagaaaatgttacacagttgcatgttgttggaaacaccaatgagttcacctcattgcctc |
16961604 |
T |
|
| Q |
101 |
aaaatttcaactcatacacactcttttcaacactttccactttatcaagcttgaaagtactctctttggtttctcttggtttatgggggccactacctga |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
16961603 |
aaaatttcaactcatacacactcttttcaacactttccactttatcaagcttgaaagtactctctttggtttcacttggtttatgggggccactacctga |
16961504 |
T |
|
| Q |
201 |
aacaatagctcaattatcttcactagaaatacttaacattagctcaaattactttagtggagaaataccatctcagctttcacatcttaacaatcttcaa |
300 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
16961503 |
aacaatagctcaattatcttcactagaaatacttaacattagctcaaattactttagtggagaaataccatctcaactttcacatcttaacaatcttcaa |
16961404 |
T |
|
| Q |
301 |
tcactagtacttgatgataatcatttcaatggtcaaattccaaatattttaggctcacttcatggtttagttgtgcttagtatgaagaaaaatttcatta |
400 |
Q |
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||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16961403 |
tcattagtacttgatgataaccatttcaatggtcaaattccaaatattttaggctcacttcatggtttagttgtgcttagtatgaagaaaaatttcatta |
16961304 |
T |
|
| Q |
401 |
gtggaagtttgccaaattcagtgaatgatcttgttactctt |
441 |
Q |
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|||||||||| |||||||||||||||||||||||||||||| |
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| T |
16961303 |
gtggaagtttaccaaattcagtgaatgatcttgttactctt |
16961263 |
T |
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