View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3023_low_4 (Length: 448)
Name: NF3023_low_4
Description: NF3023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3023_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 216 - 435
Target Start/End: Complemental strand, 35673095 - 35672873
Alignment:
| Q |
216 |
agcctccaccatgaaggttttgtggtagtatttgatgagtgtgagttgaagatgccatgaatatgatgatgacgtgaagaacaaaaacctgaactagggt |
315 |
Q |
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| T |
35673095 |
agcctccaccatgaaggttttgtggtagtatttgatgagtgtgagttgaagatgccatgaatatgatgatgacgtgaagaacaaaaacctgaactagggt |
35672996 |
T |
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| Q |
316 |
tgaaaactatgactcaaagtttgggtcactttttgtttatggtgtaacttgtgtttggatgtttttggtgaaagggaatatattaggagg---attcagg |
412 |
Q |
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| T |
35672995 |
tgaaaacaatgactcaaagtttgggtcactttttgtttatggtgtaacttgtgtttggatgtttttagtgaaagggaatatattaggaggagcattcagg |
35672896 |
T |
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| Q |
413 |
agacatgtgtgatgtgtttgttg |
435 |
Q |
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| T |
35672895 |
agacatgtgtgatgtgtttgttg |
35672873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 287 - 424
Target Start/End: Complemental strand, 35669804 - 35669663
Alignment:
| Q |
287 |
acgtgaagaacaaaaacctgaactagggttgaaaactatgactcaaa---gtttgggtcacttttt-gtttatg--gtgtaacttgtgtttggatgtttt |
380 |
Q |
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| T |
35669804 |
acgtgaaaaacaaaaacttgaac-acggttgaaaactagaactcaaaaaagtttgggtcacttttttgtttatgttgtgtaacttgtgtttggctctatt |
35669706 |
T |
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| Q |
381 |
tggtgaaagggaatatattaggaggattcaggagacatgtgtga |
424 |
Q |
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| T |
35669705 |
tagtgaatcg-aatatattaggaggattcaggagacatttgtga |
35669663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 134; Significance: 1e-69; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 16 - 149
Target Start/End: Complemental strand, 35202726 - 35202593
Alignment:
| Q |
16 |
cagaagaagaacttgaaactcttgtagaattgaaccttgttgcaaaaggaaagttcatcacatcatgacaagaagagttaccataaagaagagaattgat |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35202726 |
cagaagaagaacttgaaactcttgtagaattgaaccttgttgcaaaaggaaagttcatcacatcatgacaagaagagttaccataaagaagagaattgat |
35202627 |
T |
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| Q |
116 |
atggtttgaggtagaagcaatatcaaaactatgg |
149 |
Q |
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| T |
35202626 |
atggtttgaggtagaagcaatatcaaaactatgg |
35202593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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