View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3023_low_5 (Length: 446)
Name: NF3023_low_5
Description: NF3023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3023_low_5 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 9 - 446
Target Start/End: Complemental strand, 5073664 - 5073232
Alignment:
| Q |
9 |
ctcctattgttgctttaagagctgatatggatgctctttctatgcaggttcattatgctagtccttgaactattgctctcttcaatttagtttttaaagt |
108 |
Q |
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| T |
5073664 |
ctccttttgttgctttaagagctgatatggatgctctttctatgcaggttcattatgctagtccttaaactattgctctcttcaatttagtttttaaagt |
5073565 |
T |
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| Q |
109 |
atatgaaatcgttaatttcatctctaaagtatatgaaaaatccgtcaattttgttggtaacatcttaatagtaacatttaatagcagcgactaaattgtc |
208 |
Q |
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| T |
5073564 |
atatgaaatcgttaatttcgtctctgaagtatatgaaaaatccgtcaattttgttggtgacatcttaatagtaacatttaatagcagcgactaaattgtc |
5073465 |
T |
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| Q |
209 |
tgagtttgtatactttatgtactacttttaagaactaaaatgttttattcattagcgtgagacatccttacaaatcactttctataaactctatttagac |
308 |
Q |
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| T |
5073464 |
tgagtttgtatact-----tactac-tttaagaactaaaatgttttattcattagcgtgagacatccttacaaatcactttctataaactctatttagac |
5073371 |
T |
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| Q |
309 |
cttatctctttttcaca-nnnnnnncttcttctaataaactacttgattttctttttgcacgataaatgttagtaattagttcttcgtaatgttaatgtt |
407 |
Q |
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| T |
5073370 |
cttatctctttttcacattttttttcttcttctaataaactacttgattttctttttgcacgataaatgttagtaattagttcttcgtaatgttaatgtt |
5073271 |
T |
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| Q |
408 |
aggggagagttcgaatccatgtcgcctctgtgctgctcc |
446 |
Q |
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| T |
5073270 |
aggggagagttcgaatccatgtcgcctctatgttgctcc |
5073232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 103 - 180
Target Start/End: Original strand, 2055513 - 2055591
Alignment:
| Q |
103 |
taaagtatatgaaatcgtt-aatttcatctctaaagtatatgaaaaatccgtcaattttgttggtaacatcttaatagt |
180 |
Q |
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| T |
2055513 |
taaagtatatgaaatcggtcaatttagtctctaaagtatatgaaaaattggtcaatttagtccttcacatcttaatagt |
2055591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 147
Target Start/End: Complemental strand, 5099561 - 5099500
Alignment:
| Q |
87 |
tcttcaatttagtttttaaagtatatgaaat-cgttaatttcatctctaaagtatatgaaaa |
147 |
Q |
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| T |
5099561 |
tcttaaatttagtctttaaactatatgaaatccgttaatttagtccctaaagtatatgaaaa |
5099500 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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