View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3023_low_6 (Length: 395)
Name: NF3023_low_6
Description: NF3023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3023_low_6 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 28410763 - 28410525
Alignment:
| Q |
1 |
attttaacaacttactatcaatttggtcctcatactgtactaatgactatcaatttgagggtgtgaaagacctttttgaaacatttgtaatctcccagtt |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
28410763 |
attttaacaagttactatcaatttggtcctcatattgtactaatgactatcaatttgagggtgtgagagacctttttgaaacatttgtaatctcccagtt |
28410664 |
T |
|
| Q |
101 |
aggagtgttctataaagccaagaacaaatttggtggttttctctaaacacaaatagcaacaactaagagaatcattgtttttaacaaatatacaaatgca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28410663 |
aggagtgttctataaagccaagaacaaatttggtggttttctctaaacacaaatagcaacaactaagagaatcattgtttttaacaaatatacaaatgca |
28410564 |
T |
|
| Q |
201 |
taaaccatttgtttaatgagtaatttgtgatgagtttgg |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28410563 |
taaaccatttgtttaatgagtaatttgtgatgagtttgg |
28410525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 301 - 386
Target Start/End: Complemental strand, 28410454 - 28410370
Alignment:
| Q |
301 |
tgataacctttgtaacttgtaagctctatgaactgtgatgattaattttctctctttctcgtagcaagaagcattcagaagaataa |
386 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28410454 |
tgataacctt-gtaacttgtaagctctatgaactgtgatcattaattttctctctttctcgtagcaagaagcattcagaagaataa |
28410370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University