View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3023_low_8 (Length: 351)
Name: NF3023_low_8
Description: NF3023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3023_low_8 |
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| [»] chr2 (2 HSPs) |
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| [»] scaffold0015 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 308; Significance: 1e-173; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 40 - 351
Target Start/End: Original strand, 41388551 - 41388862
Alignment:
| Q |
40 |
agtgtgatgttgatatcagaaaggacctgtatggaaacattgtccttagtggtggtactactatgttccctggtattgctgacagaatgagcaaggaaat |
139 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41388551 |
agtgtgatgttgatatcagaaaggacctgtatggaaacattgtccttagtggtggtactactatgttccctggtattgctgacagaatgagcaaggaaat |
41388650 |
T |
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| Q |
140 |
taccgcgttggccccaagcagcatgaagatcaaggtggttgctccacccgagagaaaatacagtgtctggattggtggctctatcttagcttctcttagc |
239 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41388651 |
taccgcgttggccccaagcagcatgaagatcaaggtggttgctccacccgagagaaaatacagtgtctggattggtggctctatcttagcttctcttagc |
41388750 |
T |
|
| Q |
240 |
acttttcaacaggtgagaaaccgatatattcacattgtccgtgtgatttatgcacgcagtagaacgcttttttgacgtgtttgattgatttgggatacta |
339 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
41388751 |
acttttcaacaggtgagaaaccgatatattcacattgtccgtgtgatttatgcacgcagtagaatgcttttttgacgtgtttgattgatttgggatacta |
41388850 |
T |
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| Q |
340 |
atgttgaaatac |
351 |
Q |
| |
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|||||||||||| |
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| T |
41388851 |
atgttgaaatac |
41388862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 40 - 253
Target Start/End: Complemental strand, 1262067 - 1261854
Alignment:
| Q |
40 |
agtgtgatgttgatatcagaaaggacctgtatggaaacattgtccttagtggtggtactactatgttccctggtattgctgacagaatgagcaaggaaat |
139 |
Q |
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|||||||||||||||| || ||||| || |||||||| ||||| |||||||| ||| |||| ||||| ||||| ||||||||| | |||||||||||||| |
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| T |
1262067 |
agtgtgatgttgatattaggaaggatctatatggaaatattgtgcttagtggaggttctaccatgtttcctggaattgctgaccgtatgagcaaggaaat |
1261968 |
T |
|
| Q |
140 |
taccgcgttggccccaagcagcatgaagatcaaggtggttgctccacccgagagaaaatacagtgtctggattggtggctctatcttagcttctcttagc |
239 |
Q |
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| || | || ||||| |||||||| |||||||||||||| || || ||||| || |||||||||||||||||||| |||||||| || || || || |
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| T |
1261967 |
cagtgctcttgctccaagtagcatgaaaatcaaggtggttgcacctcctgagaggaagtacagtgtctggattggtgggtctatcttggcatcactcagt |
1261868 |
T |
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| Q |
240 |
acttttcaacaggt |
253 |
Q |
| |
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|| ||||||||||| |
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| T |
1261867 |
acctttcaacaggt |
1261854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 96; Significance: 5e-47; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 40 - 255
Target Start/End: Complemental strand, 43647088 - 43646873
Alignment:
| Q |
40 |
agtgtgatgttgatatcagaaaggacctgtatggaaacattgtccttagtggtggtactactatgttccctggtattgctgacagaatgagcaaggaaat |
139 |
Q |
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|||||||||| |||||||||||||| ||||| || |||||||| |||||||||||| | |||||||||||||||||||||||| | ||||||||||| || |
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| T |
43647088 |
agtgtgatgtggatatcagaaaggatctgtacggcaacattgttcttagtggtggttcaactatgttccctggtattgctgaccgtatgagcaaggagat |
43646989 |
T |
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| Q |
140 |
taccgcgttggccccaagcagcatgaagatcaaggtggttgctccacccgagagaaaatacagtgtctggattggtggctctatcttagcttctcttagc |
239 |
Q |
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|| || |||| || |||||||||||||| ||||| || |||||||| |||||||| ||||||||||||||||| || || ||| | |||||||| || |
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| T |
43646988 |
cactgccctggctcctagcagcatgaagattaaggttgtggctccaccagagagaaagtacagtgtctggattggaggatcaatccttgcttctctcagt |
43646889 |
T |
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| Q |
240 |
acttttcaacaggtga |
255 |
Q |
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||||| || ||||||| |
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| T |
43646888 |
actttccagcaggtga |
43646873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 40 - 241
Target Start/End: Original strand, 8689972 - 8690173
Alignment:
| Q |
40 |
agtgtgatgttgatatcagaaaggacctgtatggaaacattgtccttagtggtggtactactatgttccctggtattgctgacagaatgagcaaggaaat |
139 |
Q |
| |
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|||| |||||||||||||| || ||| |||| || |||||||| ||| || || ||||| |||||||| || |||||||| ||||||||||||||||| |
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| T |
8689972 |
agtgcgatgttgatatcaggaaagacttgtacggtaacattgtgctttcaggaggaactaccatgttcccaggcattgctgatagaatgagcaaggaaat |
8690071 |
T |
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| Q |
140 |
taccgcgttggccccaagcagcatgaagatcaaggtggttgctccacccgagagaaaatacagtgtctggattggtggctctatcttagcttctcttagc |
239 |
Q |
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| | || ||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||| || || || ||||| || ||||||||| |
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| T |
8690072 |
ttctgctttggccccaagtagcatgaagatcaaggtggttgcaccacctgagagaaaatacagtgtctggatcggaggttccatcttggcatctcttagc |
8690171 |
T |
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| Q |
240 |
ac |
241 |
Q |
| |
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|| |
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| T |
8690172 |
ac |
8690173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 40 - 253
Target Start/End: Complemental strand, 37050402 - 37050189
Alignment:
| Q |
40 |
agtgtgatgttgatatcagaaaggacctgtatggaaacattgtccttagtggtggtactactatgttccctggtattgctgacagaatgagcaaggaaat |
139 |
Q |
| |
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||||||||||||| || || ||||| || ||||| ||||| || | ||||||||| | || |||||||||||||||||||| |||||||||||||| || |
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| T |
37050402 |
agtgtgatgttgacattaggaaggatctctatggtaacatcgtgttgagtggtggttcaacaatgttccctggtattgctgatagaatgagcaaggagat |
37050303 |
T |
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| Q |
140 |
taccgcgttggccccaagcagcatgaagatcaaggtggttgctccacccgagagaaaatacagtgtctggattggtggctctatcttagcttctcttagc |
239 |
Q |
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||| || ||||| || || |||||||| |||||||| || || ||||| ||||| || ||||||||||||||||| || || || || || ||||| ||| |
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| T |
37050302 |
tacagcattggctcctagtagcatgaaaatcaaggttgtagcaccaccagagaggaagtacagtgtctggattggaggttccattttggcatctctcagc |
37050203 |
T |
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| Q |
240 |
acttttcaacaggt |
253 |
Q |
| |
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||||| |||||||| |
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| T |
37050202 |
actttccaacaggt |
37050189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 40 - 253
Target Start/End: Original strand, 68587 - 68800
Alignment:
| Q |
40 |
agtgtgatgttgatatcagaaaggacctgtatggaaacattgtccttagtggtggtactactatgttccctggtattgctgacagaatgagcaaggaaat |
139 |
Q |
| |
|
|||||||||||||||| |||||||| || ||||||||||| || | ||||||||||| ||||||||||| || |||||||| || ||||||||||| || |
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| T |
68587 |
agtgtgatgttgatattagaaaggatctctatggaaacatcgtattgagtggtggtacgactatgttccccggcattgctgataggatgagcaaggagat |
68686 |
T |
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| Q |
140 |
taccgcgttggccccaagcagcatgaagatcaaggtggttgctccacccgagagaaaatacagtgtctggattggtggctctatcttagcttctcttagc |
239 |
Q |
| |
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|| || ||||| ||||| |||||||| || ||||||||||| ||||| ||||| || || |||||||||||||| ||||| || || ||||| || ||| |
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| T |
68687 |
cacagcattggcaccaagtagcatgaaaattaaggtggttgcaccaccagagaggaagtatagtgtctggattggaggctccattttggcttccctcagc |
68786 |
T |
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| Q |
240 |
acttttcaacaggt |
253 |
Q |
| |
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|| || |||||||| |
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| T |
68787 |
accttccaacaggt |
68800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 42 - 253
Target Start/End: Complemental strand, 59219 - 59008
Alignment:
| Q |
42 |
tgtgatgttgatatcagaaaggacctgtatggaaacattgtccttagtggtggtactactatgttccctggtattgctgacagaatgagcaaggaaatta |
141 |
Q |
| |
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||||||||||| ||||| || ||||||||||| ||||||||||| || ||||| || ||||| ||||| |||||||| |||||||||||||| ||| |
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| T |
59219 |
tgtgatgttgacatcaggaaagacctgtatggtaacattgtcctatcaggaggtacaaccatgtttcctggcattgctgatagaatgagcaaggagattt |
59120 |
T |
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| Q |
142 |
ccgcgttggccccaagcagcatgaagatcaaggtggttgctccacccgagagaaaatacagtgtctggattggtggctctatcttagcttctcttagcac |
241 |
Q |
| |
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| || || || ||||| |||||||||||||||||||| || || || |||||||| |||||||||||||||||||| |||||||| || || || ||||| |
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| T |
59119 |
ctgcattagcaccaagtagcatgaagatcaaggtggtagcaccgcctgagagaaagtacagtgtctggattggtggttctatcttggcatccctaagcac |
59020 |
T |
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| Q |
242 |
ttttcaacaggt |
253 |
Q |
| |
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|| |||||||| |
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| T |
59019 |
cttccaacaggt |
59008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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