View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3024_high_2 (Length: 471)
Name: NF3024_high_2
Description: NF3024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3024_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 5 - 454
Target Start/End: Complemental strand, 30273575 - 30273122
Alignment:
| Q |
5 |
tagattatacttacctcttg----gttgtgattacaggcagtgataaagaggttgatgactgatgtgccttttggtgttctactatctggaggtttggac |
100 |
Q |
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|||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30273575 |
tagattttacttacctcttggttggttgtgattacaggcagtgataaagaggttgatgactgatgtgccttttggtgttctactatctggaggtttggac |
30273476 |
T |
|
| Q |
101 |
tcatcattggttgcatccatcacttctcgctacctagcaaccactaaagctgctgaacaatggggatcaaaattacactcattctgcgttggccttgagg |
200 |
Q |
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| T |
30273475 |
tcatcattggttgcatccatcacttctcgctacctagcaaccactaaagctgctgaacaatggggatcaaaattacactcattctgcgttggccttgagg |
30273376 |
T |
|
| Q |
201 |
tgcatatattcactcaaattttttagtcgcttttgcaaactttatgtaattcttttatttttcaaaagaatgccttcaatgttgtcttaatatcttgtct |
300 |
Q |
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| T |
30273375 |
tgcatatatacacttaaatttttgaatcactttcgcaaactttatgtaattcttttatttttaaaaagaataccttcaatgttgtcttaatatcttgtct |
30273276 |
T |
|
| Q |
301 |
tctaatttcaaatagggctcacctgatcttaaggctggaaaagaagttgcagattaccttggaactgttcaccatgagtttacctttactgttcaggtaa |
400 |
Q |
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| T |
30273275 |
tctaatttcaaatagggctcacctgatcttaaggctggaaaagaagttgcagattaccttggaactgttcaccatgagtttacctttactgttcaggtaa |
30273176 |
T |
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| Q |
401 |
ctgcttgaaatcaatgttttaaaaatttgactagagatcgaaccgacgcaacct |
454 |
Q |
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| T |
30273175 |
ctgcttgaaatcaatgttttaaaaatttgactagagatcgaaccgacgaaacct |
30273122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 78; Significance: 4e-36; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 29 - 186
Target Start/End: Complemental strand, 25966510 - 25966353
Alignment:
| Q |
29 |
tgattacaggcagtgataaagaggttgatgactgatgtgccttttggtgttctactatctggaggtttggactcatcattggttgcatccatcacttctc |
128 |
Q |
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||||||||||| |||||||| |||||||||||||||||||| || |||||| ||||||||||||||||||| || |||||||||||| | ||||| || |
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| T |
25966510 |
tgattacaggctgtgataaaaaggttgatgactgatgtgccgttcggtgttttactatctggaggtttggattcttcattggttgcagcagtcactgcta |
25966411 |
T |
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| Q |
129 |
gctacctagcaaccactaaagctgctgaacaatggggatcaaaattacactcattctg |
186 |
Q |
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| T |
25966410 |
gatacctggctggcacaaaagctgctaaacaatggggagcaaaattacactcattctg |
25966353 |
T |
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