View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3024_low_1 (Length: 641)

Name: NF3024_low_1
Description: NF3024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3024_low_1
NF3024_low_1
[»] chr4 (10 HSPs)
chr4 (18-229)||(1390244-1390455)
chr4 (297-474)||(1390680-1390860)
chr4 (18-181)||(1397708-1397871)
chr4 (563-633)||(1390865-1390935)
chr4 (237-301)||(1359539-1359603)
chr4 (238-301)||(1390489-1390552)
chr4 (463-552)||(45645951-45646040)
chr4 (248-283)||(45645613-45645648)
chr4 (30-112)||(45645267-45645349)
chr4 (350-402)||(45645847-45645899)
[»] chr5 (9 HSPs)
chr5 (327-552)||(34666319-34666547)
chr5 (462-552)||(34646763-34646853)
chr5 (463-547)||(19648706-19648790)
chr5 (248-283)||(34646414-34646449)
chr5 (248-283)||(34666108-34666143)
chr5 (350-428)||(19648822-19648900)
chr5 (248-285)||(19649094-19649131)
chr5 (327-406)||(34646625-34646707)
chr5 (30-103)||(19649401-19649474)
[»] chr8 (10 HSPs)
chr8 (462-552)||(14192654-14192744)
chr8 (350-566)||(14201545-14201755)
chr8 (478-588)||(14183738-14183851)
chr8 (18-217)||(14200962-14201161)
chr8 (478-552)||(40718477-40718551)
chr8 (241-283)||(40718111-40718153)
chr8 (241-285)||(14183354-14183398)
chr8 (34-216)||(14183022-14183204)
chr8 (356-429)||(14183601-14183674)
chr8 (358-418)||(40718360-40718420)
[»] chr6 (3 HSPs)
chr6 (479-549)||(34303447-34303517)
chr6 (469-551)||(33888832-33888914)
chr6 (30-76)||(33893429-33893475)


Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 18 - 229
Target Start/End: Original strand, 1390244 - 1390455
Alignment:
Q  18 gatggatcaatatcacaaggagatcttagtttggaaactcttacattagatttcacctctggtttttctatttcatttcctaaaacagtgataggtttta 117  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||     
T  1390244 gatggatcaatatcacaaggagatcttagtttgaaaactcttacattagatttcacctctggttcttctatttcatttcctaaaacagtgataggttttg 1390343  T
Q  118 gacataataatacattgtcatttgaaggcaagagctctggtctggttggccttggaaatggacccatgtctcttataaatcaattgggttcatcaattgg 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  1390344 gacataataatacattgtcatttgaaggcaagagctctggtctggttggccttggaaatggacccgtgtctcttataaatcaattgggttcatcaattgg 1390443  T
Q  218 agaagctgctat 229  Q
     |||||||||||    
T  1390444 tgaagctgctat 1390455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 297 - 474
Target Start/End: Original strand, 1390680 - 1390860
Alignment:
Q  297 tggtattttaaacctttgttattcatttgcatcaaatgaaaatgattttccttt---cactgcacattttcaaggtgcagatattaagttgcattctatt 393  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||| |   ||||||||||||| |||||||||||||||||||||| ||||||    
T  1390680 tggtattttaaacctttgttattcatttgcatcaaatgaatatgattttcctataatcactgcacattttgaaggtgcagatattaagttgcaatctatt 1390779  T
Q  394 agcacctttgttcaagttgccgatggggttgtttgtttggctcttgtcccatctcgaatcaataaagtcatctttgggaat 474  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  1390780 agcacctttgttcaagttgccgatggggttgtttgtttggctcttgtcccatctcgaatcaataaaggcatctttgggaat 1390860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 18 - 181
Target Start/End: Original strand, 1397708 - 1397871
Alignment:
Q  18 gatggatcaatatcacaaggagatcttagtttggaaactcttacattagatttcacctctggtttttctatttcatttcctaaaacagtgataggtttta 117  Q
    |||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |||||||||||| |||||||| |||||||||| |     
T  1397708 gatggatcaaaatcacaaggagatcttagtttagaaactcttacattagattccacctctggttcttctatttcattgcctaaaactgtgataggttgtg 1397807  T
Q  118 gacataataatacattgtcatttgaaggcaagagctctggtctggttggccttggaaatggacc 181  Q
    ||||||  |||| | ||| |||||||||| ||||||||||| |||||| ||||| |||||||||    
T  1397808 gacatataaatatagtgttatttgaaggctagagctctggtgtggttgaccttgcaaatggacc 1397871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 563 - 633
Target Start/End: Original strand, 1390865 - 1390935
Alignment:
Q  563 tgtagactttgtttactttactccttgaatttataataataataatagtaattcattttttacttcatctc 633  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1390865 tgtagactttgtttactttactccttgaatttataataataataatagtaattcattttttacttcatctc 1390935  T

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Target: chr4; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 237 - 301
Target Start/End: Original strand, 1359539 - 1359603
Alignment:
Q  237 aataacattgaaagcatttagtgttggaaacaaaagagtagaatttgaaaagcaatcaaatggta 301  Q
    ||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||    
T  1359539 aataacattgaaagcatttagtgttggaaacaaaatagtggaatttgaaaagcaatcaaatggta 1359603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 238 - 301
Target Start/End: Original strand, 1390489 - 1390552
Alignment:
Q  238 ataacattgaaagcatttagtgttggaaacaaaagagtagaatttgaaaagcaatcaaatggta 301  Q
    |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  1390489 ataacattgaaagcatttagtgttggaaacaaaagagtagaattttcaaagcaatcaaatggta 1390552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 463 - 552
Target Start/End: Original strand, 45645951 - 45646040
Alignment:
Q  463 atctttgggaatttggctcaacaaaatttgttggttggttatgatcttcaacaaaaaattgtgtcttttaagcctattgattgtaccaaa 552  Q
    |||||||| || |||||||||||||||||||||||||||| |||||||||||||  ||  ||||| ||||| |||| |||||||||||||    
T  45645951 atctttggtaacttggctcaacaaaatttgttggttggttgtgatcttcaacaaggaacagtgtcctttaaacctactgattgtaccaaa 45646040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 248 - 283
Target Start/End: Original strand, 45645613 - 45645648
Alignment:
Q  248 aagcatttagtgttggaaacaaaagagtagaatttg 283  Q
    ||||||||||||||||||||||||||||||||||||    
T  45645613 aagcatttagtgttggaaacaaaagagtagaatttg 45645648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 30 - 112
Target Start/End: Original strand, 45645267 - 45645349
Alignment:
Q  30 tcacaaggagatcttagtttggaaactcttacattagatttcacctctggtttttctatttcatttcctaaaacagtgatagg 112  Q
    |||||||||||||||||| | |||||||||||||| |||| |||| ||||     || |||||||||||||||| ||||||||    
T  45645267 tcacaaggagatcttagtgttgaaactcttacattggattccaccactggaagccctgtttcatttcctaaaactgtgatagg 45645349  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 350 - 402
Target Start/End: Original strand, 45645847 - 45645899
Alignment:
Q  350 tcactgcacattttcaaggtgcagatattaagttgcattctattagcaccttt 402  Q
    |||| ||||||||| ||||||| ||| || |||||||||||||||| ||||||    
T  45645847 tcaccgcacattttaaaggtgctgatgttgagttgcattctattagtaccttt 45645899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 2e-29; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 327 - 552
Target Start/End: Original strand, 34666319 - 34666547
Alignment:
Q  327 atcaaatgaaaatgattttccttt---cactgcacattttcaaggtgcagatattaagttgcattctattagcacctttgttcaagttgccgatggggtt 423  Q
    |||||||||| ||||||||||| |   ||| ||||||||| ||||||| |||||| |||||||||||||||| |||||||||| | || | |||||  ||    
T  34666319 atcaaatgaatatgattttcctataatcaccgcacattttaaaggtgccgatattgagttgcattctattagtacctttgttccaattactgatggtatt 34666418  T
Q  424 gtttgtttggctcttgtcccatctcgaatcaataaagt--catctttgggaatttggctcaacaaaatttgttggttggttatgatcttcaacaaaaaat 521  Q
    ||||| || ||| |    |||||||   ||||    ||  |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||     
T  34666419 gtttgctttgctttccaaccatctcc--tcaacttggttccatctttgggaacttggctcaacaaaatttgttggttggttacgatcttcaacaaaaaac 34666516  T
Q  522 tgtgtcttttaagcctattgattgtaccaaa 552  Q
     ||||| ||||| |||| |||||||||||||    
T  34666517 agtgtcgtttaaacctactgattgtaccaaa 34666547  T

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Target: chr5; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 462 - 552
Target Start/End: Original strand, 34646763 - 34646853
Alignment:
Q  462 catctttgggaatttggctcaacaaaatttgttggttggttatgatcttcaacaaaaaattgtgtcttttaagcctattgattgtaccaaa 552  Q
    |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||  ||||| ||||| |||| |||||||||||||    
T  34646763 catctttgggaacttggctcaacaaaatttgttggttggttacgatcttcaacaaaaaacagtgtcgtttaaacctactgattgtaccaaa 34646853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 463 - 547
Target Start/End: Complemental strand, 19648790 - 19648706
Alignment:
Q  463 atctttgggaatttggctcaacaaaatttgttggttggttatgatcttcaacaaaaaattgtgtcttttaagcctattgattgta 547  Q
    |||||||| || ||||| |||| ||||||||||||||||||||||||||||||||| |||||||| |||||||||| ||||||||    
T  19648790 atctttggaaacttggcacaactaaatttgttggttggttatgatcttcaacaaaatattgtgtcgtttaagcctagtgattgta 19648706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 248 - 283
Target Start/End: Original strand, 34646414 - 34646449
Alignment:
Q  248 aagcatttagtgttggaaacaaaagagtagaatttg 283  Q
    ||||||||||||||||||||||||||||||||||||    
T  34646414 aagcatttagtgttggaaacaaaagagtagaatttg 34646449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 248 - 283
Target Start/End: Original strand, 34666108 - 34666143
Alignment:
Q  248 aagcatttagtgttggaaacaaaagagtagaatttg 283  Q
    ||||||||||||||||||||||||||||||||||||    
T  34666108 aagcatttagtgttggaaacaaaagagtagaatttg 34666143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 350 - 428
Target Start/End: Complemental strand, 19648900 - 19648822
Alignment:
Q  350 tcactgcacattttcaaggtgcagatattaagttgcattctattagcacctttgttcaagttgccgatggggttgtttg 428  Q
    |||||||||||||| |||||||||||||||||||| |  | ||||| ||||||| ||| ||||| ||||| || |||||    
T  19648900 tcactgcacattttaaaggtgcagatattaagttgaacccaattagtacctttgctcatgttgctgatggtgtggtttg 19648822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 248 - 285
Target Start/End: Complemental strand, 19649131 - 19649094
Alignment:
Q  248 aagcatttagtgttggaaacaaaagagtagaatttgaa 285  Q
    |||||||||||||||||||||||||| |||||||||||    
T  19649131 aagcatttagtgttggaaacaaaagaatagaatttgaa 19649094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 327 - 406
Target Start/End: Original strand, 34646625 - 34646707
Alignment:
Q  327 atcaaatgaaaatgattttccttt---cactgcacattttcaaggtgcagatattaagttgcattctattagcacctttgttc 406  Q
    |||||||||| ||||||||||| |   ||| | ||||||| ||||||| ||| || |||||||||||||||| ||||||||||    
T  34646625 atcaaatgaatatgattttcctataatcaccgtacattttaaaggtgccgatgttgagttgcattctattagtacctttgttc 34646707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 103
Target Start/End: Complemental strand, 19649474 - 19649401
Alignment:
Q  30 tcacaaggagatcttagtttggaaactcttacattagatttcacctctggtttttctatttcatttcctaaaac 103  Q
    ||||||||||| |||||| | || ||||||||||| |||| |||| | |||  |||| ||||||||||||||||    
T  19649474 tcacaaggagaacttagtgttgagactcttacattggattccaccaccggtcattctgtttcatttcctaaaac 19649401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 5e-27; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 462 - 552
Target Start/End: Original strand, 14192654 - 14192744
Alignment:
Q  462 catctttgggaatttggctcaacaaaatttgttggttggttatgatcttcaacaaaaaattgtgtcttttaagcctattgattgtaccaaa 552  Q
    ||||||||| ||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||| ||||| |||| |||||||||||||    
T  14192654 catctttggaaatttggctcagcaaaatttgatggttggttatgatcttcagcaaaaaattgtgtcctttaaacctagtgattgtaccaaa 14192744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 350 - 566
Target Start/End: Original strand, 14201545 - 14201755
Alignment:
Q  350 tcactgcacattttcaaggtgcagatattaagttgcattctattagcacctttgttcaagttgccgatggggttgtttgtttggctcttgtcccatctcg 449  Q
    |||||||||||||| |||||||||||||||| ||| ||| |||||| |||||| || ||||| | |||||| |||  || |||||| || |||||||||     
T  14201545 tcactgcacattttaaaggtgcagatattaaattgtattatattagtacctttattaaagtttctgatgggattgcatgcttggcttttatcccatctca 14201644  T
Q  450 aatcaataaagtcatctttgggaatttggctcaacaaaatttgttggttggttatgatcttcaacaaaaaattgtgtcttttaagcctattgattgtacc 549  Q
    ||       || ||||||||| ||  |||||||||| |||||||||||||||||| |||||   ||||| | |||  | ||||||||| |||||||||||    
T  14201645 aac------agccatctttggaaacgtggctcaacagaatttgttggttggttataatcttgttcaaaatactgttacatttaagcctgttgattgtacc 14201738  T
Q  550 aaaccatattgagtgta 566  Q
    || ||||||||| ||||    
T  14201739 aagccatattgaatgta 14201755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 478 - 588
Target Start/End: Original strand, 14183738 - 14183851
Alignment:
Q  478 gctcaacaaaatttgttggttggttatgatcttcaacaaaaaattgtgtcttttaagcctattgattgtaccaaaccatattgag---tgtagactttgt 574  Q
    ||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| ||||   || || |   ||||||||||||    
T  14183738 gctcagcagaatttgttggttggttatgatcttcaacaaaaaattgtgtcgtttaagcctactgattgtagcaaagtgtaatgggtgttgtagactttgt 14183837  T
Q  575 ttactttactcctt 588  Q
    ||||||| ||||||    
T  14183838 ttactttcctcctt 14183851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 18 - 217
Target Start/End: Original strand, 14200962 - 14201161
Alignment:
Q  18 gatggatcaatatcacaaggagatcttagtttggaaactcttacattagatttcacctctggtttttctatttcatttcctaaaacagtgataggtttta 117  Q
    ||||||||||| ||||||||| |||||||| |||| |||||||||||||||| |||| | || |  ||  ||||||||||||||||| ||||||| | |     
T  14200962 gatggatcaatttcacaaggatatcttagtgtggagactcttacattagattccaccaccggctactcagtttcatttcctaaaacaatgataggatgtg 14201061  T
Q  118 gacataataatacattgtcatttgaaggcaagagctctggtctggttggccttggaaatggacccatgtctcttataaatcaattgggttcatcaattgg 217  Q
    || |||  ||||||  | | ||| | |||   ||||||||| | ||||||||||||| |||||| |||||||||  |  |||||||||| ||||||||||    
T  14201062 gatatagaaatacagggacgtttcatggcccaagctctggtatagttggccttggaagtggacctatgtctcttccatctcaattgggtacatcaattgg 14201161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 478 - 552
Target Start/End: Original strand, 40718477 - 40718551
Alignment:
Q  478 gctcaacaaaatttgttggttggttatgatcttcaacaaaaaattgtgtcttttaagcctattgattgtaccaaa 552  Q
    |||||||| |||||||||||||||||||| ||| ||||||||| |||||| |||||||||| |||||||| ||||    
T  40718477 gctcaacagaatttgttggttggttatgaccttaaacaaaaaactgtgtcatttaagcctactgattgtagcaaa 40718551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 241 - 283
Target Start/End: Original strand, 40718111 - 40718153
Alignment:
Q  241 acattgaaagcatttagtgttggaaacaaaagagtagaatttg 283  Q
    |||||| |||||||||||||||||||||||||| |||||||||    
T  40718111 acattggaagcatttagtgttggaaacaaaagaatagaatttg 40718153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 241 - 285
Target Start/End: Original strand, 14183354 - 14183398
Alignment:
Q  241 acattgaaagcatttagtgttggaaacaaaagagtagaatttgaa 285  Q
    |||||| |||||||||||||||| ||||||||| |||||||||||    
T  14183354 acattggaagcatttagtgttggtaacaaaagaatagaatttgaa 14183398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 34 - 216
Target Start/End: Original strand, 14183022 - 14183204
Alignment:
Q  34 aaggagatcttagtttggaaactcttacattagatttcacctctggtttttctatttcatttcctaaaacagtgataggttttagacataataatacatt 133  Q
    ||||| |||||||| | || |||||||||||||| | | || ||||   | ||||||||||||||||||| |||||||| | | ||  | | |||||| |    
T  14183022 aaggaaatcttagtgttgatactcttacattagagtcctccactggacatcctatttcatttcctaaaactgtgataggatgtggaactgacaatacagt 14183121  T
Q  134 gtcatttgaaggcaagagctctggtctggttggccttggaaatggacccatgtctcttataaatcaattgggttcatcaattg 216  Q
    ||||||||||||    || |||||| | ||||||||||||  ||||||    |||||||| |  |||||||| ||||||||||    
T  14183122 gtcatttgaaggtgcaagttctggtatagttggccttggaggtggaccagcatctcttattacacaattgggatcatcaattg 14183204  T

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Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 356 - 429
Target Start/End: Original strand, 14183601 - 14183674
Alignment:
Q  356 cacattttcaaggtgcagatattaagttgcattctattagcacctttgttcaagttgccgatggggttgtttgt 429  Q
    |||||||| ||||||| ||| ||||||||||| ||||||| || |||||| | ||||| |||||  ||||||||    
T  14183601 cacattttaaaggtgcggatgttaagttgcatcctattagtacatttgttgatgttgcagatggcattgtttgt 14183674  T

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Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 358 - 418
Target Start/End: Original strand, 40718360 - 40718420
Alignment:
Q  358 cattttcaaggtgcagatattaagttgcattctattagcacctttgttcaagttgccgatg 418  Q
    |||||| ||||||| ||||||||||||||| | ||||| |||||||||   ||||||||||    
T  40718360 cattttaaaggtgcggatattaagttgcatcccattagtacctttgtttccgttgccgatg 40718420  T

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Target: chr6 (Bit Score: 39; Significance: 0.000000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 479 - 549
Target Start/End: Original strand, 34303447 - 34303517
Alignment:
Q  479 ctcaacaaaatttgttggttggttatgatcttcaacaaaaaattgtgtcttttaagcctattgattgtacc 549  Q
    |||||||| ||||  ||||||||||||| ||||||||||||| ||||||||||||| || | |||||||||    
T  34303447 ctcaacaagatttcatggttggttatgaccttcaacaaaaaactgtgtcttttaagtctgtagattgtacc 34303517  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 469 - 551
Target Start/End: Complemental strand, 33888914 - 33888832
Alignment:
Q  469 gggaatttggctcaacaaaatttgttggttggttatgatcttcaacaaaaaattgtgtcttttaagcctattgattgtaccaa 551  Q
    ||||| ||||| ||||| || ||||| ||||||||||| || ||| |||| ||| | |||||||||||||||||||| |||||    
T  33888914 gggaacttggcacaacataacttgttagttggttatgacctacaaaaaaatattatctcttttaagcctattgattgcaccaa 33888832  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 30 - 76
Target Start/End: Original strand, 33893429 - 33893475
Alignment:
Q  30 tcacaaggagatcttagtttggaaactcttacattagatttcacctc 76  Q
    |||||||||||||||||| |||| ||||| |||||||||| ||||||    
T  33893429 tcacaaggagatcttagtatggagactctaacattagattccacctc 33893475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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