View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3024_low_11 (Length: 331)

Name: NF3024_low_11
Description: NF3024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3024_low_11
NF3024_low_11
[»] chr8 (10 HSPs)
chr8 (1-318)||(9700117-9700434)
chr8 (8-43)||(27493060-27493095)
chr8 (1-44)||(31891927-31891970)
chr8 (5-41)||(38602447-38602483)
chr8 (1-44)||(16825454-16825497)
chr8 (5-44)||(30251365-30251404)
chr8 (5-44)||(37461261-37461300)
chr8 (1-46)||(31862608-31862652)
chr8 (7-44)||(33553362-33553399)
chr8 (1-41)||(16162876-16162916)
[»] chr5 (10 HSPs)
chr5 (1-44)||(7705909-7705952)
chr5 (7-44)||(35299887-35299924)
chr5 (1-40)||(6938648-6938687)
chr5 (1-44)||(9174932-9174975)
chr5 (5-44)||(14331486-14331525)
chr5 (1-38)||(16937800-16937837)
chr5 (1-38)||(26004914-26004951)
chr5 (6-43)||(39594928-39594965)
chr5 (5-37)||(6715869-6715901)
chr5 (5-41)||(10640073-10640109)
[»] chr4 (14 HSPs)
chr4 (5-40)||(17822780-17822815)
chr4 (1-44)||(18815139-18815182)
chr4 (1-44)||(23319967-23320010)
chr4 (5-44)||(27043741-27043780)
chr4 (1-40)||(39691064-39691103)
chr4 (9-44)||(42403934-42403969)
chr4 (1-39)||(27123268-27123306)
chr4 (1-42)||(21953389-21953430)
chr4 (4-41)||(22662165-22662202)
chr4 (4-41)||(22666644-22666681)
chr4 (1-42)||(35571544-35571585)
chr4 (15-44)||(41512769-41512798)
chr4 (5-37)||(18512433-18512465)
chr4 (6-42)||(32769500-32769536)
[»] chr7 (9 HSPs)
chr7 (5-43)||(17988945-17988983)
chr7 (1-44)||(25596148-25596191)
chr7 (5-56)||(37064367-37064418)
chr7 (1-36)||(40598404-40598439)
chr7 (8-46)||(28727672-28727710)
chr7 (1-42)||(40252036-40252077)
chr7 (8-40)||(4970707-4970739)
chr7 (5-37)||(30134252-30134284)
chr7 (8-44)||(40371565-40371601)
[»] chr6 (8 HSPs)
chr6 (1-47)||(12111083-12111129)
chr6 (1-40)||(32205928-32205967)
chr6 (1-39)||(2460067-2460105)
chr6 (7-35)||(738461-738489)
chr6 (1-37)||(835179-835215)
chr6 (8-44)||(9109025-9109061)
chr6 (5-37)||(9202903-9202935)
chr6 (5-41)||(30536879-30536915)
[»] chr3 (9 HSPs)
chr3 (1-38)||(40240738-40240775)
chr3 (1-41)||(51929857-51929897)
chr3 (5-36)||(24684741-24684772)
chr3 (1-35)||(584162-584196)
chr3 (7-44)||(5407365-5407402)
chr3 (8-44)||(1820043-1820079)
chr3 (7-43)||(15304280-15304316)
chr3 (1-41)||(44014712-44014752)
chr3 (4-36)||(50211854-50211886)
[»] chr2 (14 HSPs)
chr2 (1-41)||(449963-450003)
chr2 (1-44)||(9996854-9996897)
chr2 (5-40)||(15370238-15370273)
chr2 (1-43)||(10563472-10563514)
chr2 (8-42)||(26202151-26202185)
chr2 (3-44)||(2790356-2790397)
chr2 (7-44)||(7928209-7928246)
chr2 (4-37)||(18179068-18179101)
chr2 (6-39)||(27317500-27317533)
chr2 (7-44)||(28810363-28810400)
chr2 (6-42)||(2964722-2964758)
chr2 (6-42)||(4607046-4607082)
chr2 (6-42)||(6772446-6772482)
chr2 (1-37)||(15120299-15120335)
[»] chr1 (11 HSPs)
chr1 (4-44)||(10199319-10199359)
chr1 (5-44)||(2295311-2295350)
chr1 (1-36)||(3319865-3319900)
chr1 (7-37)||(37431858-37431888)
chr1 (7-37)||(52014009-52014039)
chr1 (5-42)||(24460314-24460351)
chr1 (1-37)||(1565064-1565100)
chr1 (1-33)||(2832088-2832120)
chr1 (1-37)||(30013997-30014033)
chr1 (10-42)||(36523201-36523233)
chr1 (4-36)||(50644174-50644206)
[»] scaffold0020 (1 HSPs)
scaffold0020 (4-41)||(159887-159924)


Alignment Details
Target: chr8 (Bit Score: 314; Significance: 1e-177; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 9700117 - 9700434
Alignment:
Q  1 tgctagtagataagctcaaataagttaatccaaacaggcccttactcaagcatgtgatgggaattatatcattttttcacgccgcattgttatttttata 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9700117 tgctagtagataagctcaaataagttaatccaaacaggcccttactcaagcatgtgatgggaattatatcattttttcacgccgcattgttatttttata 9700216  T
Q  101 tttttcaggcaactggaaacgtgcttatgcagctgttaagcattttgttgaatgcctgatttctaattatgatcctaaaaagagacagatcaccaaaagg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  9700217 tttttcaggcaactggaaacgtgcttatgcagctgttaagcattttgttgaatgcctgatttctaattatgatcctaaaaagagacagatcaccagaagg 9700316  T
Q  201 aatggtcttccaagtatcatattgtcagattatttagaaggccgtatgccaaaaagttcgcaagataagggatttaattggagtggggatgttgcgtcaa 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9700317 aatggtcttccaagtatcatattgtcagattatttagaaggccgtatgccaaaaagttcgcaagataagggatttaattggagtggggatgttgcgtcaa 9700416  T
Q  301 tcacttcattttcacagg 318  Q
    ||||||||||||||||||    
T  9700417 tcacttcattttcacagg 9700434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 43
Target Start/End: Original strand, 27493060 - 27493095
Alignment:
Q  8 agataagctcaaataagttaatccaaacaggccctt 43  Q
    ||||||||||||||||||||||||||||||||||||    
T  27493060 agataagctcaaataagttaatccaaacaggccctt 27493095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 31891927 - 31891970
Alignment:
Q  1 tgctagtagataagctcaaataagttaatccaaacaggccctta 44  Q
    ||||||||||||| ||||||||| ||||||||||||||||||||    
T  31891927 tgctagtagataaactcaaataaattaatccaaacaggccctta 31891970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 41
Target Start/End: Original strand, 38602447 - 38602483
Alignment:
Q  5 agtagataagctcaaataagttaatccaaacaggccc 41  Q
    ||||||||||||||||||||| |||||||||||||||    
T  38602447 agtagataagctcaaataagtcaatccaaacaggccc 38602483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 16825497 - 16825454
Alignment:
Q  1 tgctagtagataagctcaaataagttaatccaaacaggccctta 44  Q
    |||||||||||||| ||||||||| || ||||||||||||||||    
T  16825497 tgctagtagataagttcaaataagctagtccaaacaggccctta 16825454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 5 - 44
Target Start/End: Complemental strand, 30251404 - 30251365
Alignment:
Q  5 agtagataagctcaaataagttaatccaaacaggccctta 44  Q
    ||||||||||||||||||||  ||||||||||||||||||    
T  30251404 agtagataagctcaaataagccaatccaaacaggccctta 30251365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 5 - 44
Target Start/End: Original strand, 37461261 - 37461300
Alignment:
Q  5 agtagataagctcaaataagttaatccaaacaggccctta 44  Q
    |||||||||| |||||||||||||||||||||||| ||||    
T  37461261 agtagataagttcaaataagttaatccaaacaggctctta 37461300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 31862608 - 31862652
Alignment:
Q  1 tgctagtagataagctcaaataagttaatccaaacaggcccttact 46  Q
    |||||||||| |||||||||||||| ||| ||||||||||||||||    
T  31862608 tgctagtaga-aagctcaaataagtcaattcaaacaggcccttact 31862652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 44
Target Start/End: Original strand, 33553362 - 33553399
Alignment:
Q  7 tagataagctcaaataagttaatccaaacaggccctta 44  Q
    |||||||||||||||||| ||||||||||| |||||||    
T  33553362 tagataagctcaaataagctaatccaaacaagccctta 33553399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 16162876 - 16162916
Alignment:
Q  1 tgctagtagataagctcaaataagttaatccaaacaggccc 41  Q
    ||||||||||||| ||||||||||  |||||||||||||||    
T  16162876 tgctagtagataaactcaaataagccaatccaaacaggccc 16162916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 7705952 - 7705909
Alignment:
Q  1 tgctagtagataagctcaaataagttaatccaaacaggccctta 44  Q
    |||||||||||| |||||||||||| ||||||||||||||||||    
T  7705952 tgctagtagatatgctcaaataagtcaatccaaacaggccctta 7705909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 7 - 44
Target Start/End: Original strand, 35299887 - 35299924
Alignment:
Q  7 tagataagctcaaataagttaatccaaacaggccctta 44  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  35299887 tagataagctcaaataagtcaatccaaacaggccctta 35299924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 6938687 - 6938648
Alignment:
Q  1 tgctagtagataagctcaaataagttaatccaaacaggcc 40  Q
    |||||||||||||||||||||||  |||||||||||||||    
T  6938687 tgctagtagataagctcaaataacctaatccaaacaggcc 6938648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 9174932 - 9174975
Alignment:
Q  1 tgctagtagataagctcaaataagttaatccaaacaggccctta 44  Q
    ||||| ||||||||||||||||||| |||||||||| |||||||    
T  9174932 tgctaatagataagctcaaataagtcaatccaaacatgccctta 9174975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 5 - 44
Target Start/End: Original strand, 14331486 - 14331525
Alignment:
Q  5 agtagataagctcaaataagttaatccaaacaggccctta 44  Q
    ||||||||||||||||||||| ||||||||||| ||||||    
T  14331486 agtagataagctcaaataagtcaatccaaacagaccctta 14331525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 16937837 - 16937800
Alignment:
Q  1 tgctagtagataagctcaaataagttaatccaaacagg 38  Q
    ||||||||||||||||||||||||  ||||||||||||    
T  16937837 tgctagtagataagctcaaataagccaatccaaacagg 16937800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 26004951 - 26004914
Alignment:
Q  1 tgctagtagataagctcaaataagttaatccaaacagg 38  Q
    |||||||||||||||| |||||||| ||||||||||||    
T  26004951 tgctagtagataagctaaaataagtcaatccaaacagg 26004914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 43
Target Start/End: Original strand, 39594928 - 39594965
Alignment:
Q  6 gtagataagctcaaataagttaatccaaacaggccctt 43  Q
    |||||||||||||||||||| |||||||||| ||||||    
T  39594928 gtagataagctcaaataagtcaatccaaacaagccctt 39594965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 37
Target Start/End: Complemental strand, 6715901 - 6715869
Alignment:
Q  5 agtagataagctcaaataagttaatccaaacag 37  Q
    ||||||||||||| |||||||||||||||||||    
T  6715901 agtagataagctcgaataagttaatccaaacag 6715869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 41
Target Start/End: Original strand, 10640073 - 10640109
Alignment:
Q  5 agtagataagctcaaataagttaatccaaacaggccc 41  Q
    ||||||||| |||||||||| ||||||||||||||||    
T  10640073 agtagataaactcaaataagctaatccaaacaggccc 10640109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 5 - 40
Target Start/End: Complemental strand, 17822815 - 17822780
Alignment:
Q  5 agtagataagctcaaataagttaatccaaacaggcc 40  Q
    ||||||||||||||||||||||||||||||||||||    
T  17822815 agtagataagctcaaataagttaatccaaacaggcc 17822780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 18815139 - 18815182
Alignment:
Q  1 tgctagtagataagctcaaataagttaatccaaacaggccctta 44  Q
    ||||||||| ||||||||||||||  ||||||||||||||||||    
T  18815139 tgctagtaggtaagctcaaataagccaatccaaacaggccctta 18815182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 23319967 - 23320010
Alignment:
Q  1 tgctagtagataagctcaaataagttaatccaaacaggccctta 44  Q
    ||||||||||||| ||||||||||  ||||||||||||||||||    
T  23319967 tgctagtagataatctcaaataagccaatccaaacaggccctta 23320010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 5 - 44
Target Start/End: Complemental strand, 27043780 - 27043741
Alignment:
Q  5 agtagataagctcaaataagttaatccaaacaggccctta 44  Q
    ||||||||||||||||||||| ||||||||||| ||||||    
T  27043780 agtagataagctcaaataagtcaatccaaacagaccctta 27043741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 39691103 - 39691064
Alignment:
Q  1 tgctagtagataagctcaaataagttaatccaaacaggcc 40  Q
    ||||||||||||||||||||||||| ||| ||||||||||    
T  39691103 tgctagtagataagctcaaataagtcaattcaaacaggcc 39691064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 9 - 44
Target Start/End: Complemental strand, 42403969 - 42403934
Alignment:
Q  9 gataagctcaaataagttaatccaaacaggccctta 44  Q
    ||||||||||||||||| ||||||||||||||||||    
T  42403969 gataagctcaaataagtcaatccaaacaggccctta 42403934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 27123306 - 27123268
Alignment:
Q  1 tgctagtagataagctcaaataagttaatccaaacaggc 39  Q
    |||||||  ||||||||||||||||||||||||||||||    
T  27123306 tgctagtttataagctcaaataagttaatccaaacaggc 27123268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 21953389 - 21953430
Alignment:
Q  1 tgctagtagataagctcaaataagttaatccaaacaggccct 42  Q
    ||||| ||||||||||||||||||| ||||||||||| ||||    
T  21953389 tgctactagataagctcaaataagtcaatccaaacagaccct 21953430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 41
Target Start/End: Complemental strand, 22662202 - 22662165
Alignment:
Q  4 tagtagataagctcaaataagttaatccaaacaggccc 41  Q
    |||||||||| ||||||||||| |||||||||||||||    
T  22662202 tagtagataaactcaaataagtcaatccaaacaggccc 22662165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 41
Target Start/End: Complemental strand, 22666681 - 22666644
Alignment:
Q  4 tagtagataagctcaaataagttaatccaaacaggccc 41  Q
    |||||||||| ||||||||||| |||||||||||||||    
T  22666681 tagtagataaactcaaataagtcaatccaaacaggccc 22666644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 35571585 - 35571544
Alignment:
Q  1 tgctagtagataagctcaaataagttaatccaaacaggccct 42  Q
    ||||||||||||||||||||||||  ||||||||||| ||||    
T  35571585 tgctagtagataagctcaaataagccaatccaaacagaccct 35571544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 44
Target Start/End: Original strand, 41512769 - 41512798
Alignment:
Q  15 ctcaaataagttaatccaaacaggccctta 44  Q
    ||||||||||||||||||||||||||||||    
T  41512769 ctcaaataagttaatccaaacaggccctta 41512798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 37
Target Start/End: Complemental strand, 18512465 - 18512433
Alignment:
Q  5 agtagataagctcaaataagttaatccaaacag 37  Q
    |||||||||||||||||||||||||| ||||||    
T  18512465 agtagataagctcaaataagttaatcgaaacag 18512433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 6 - 42
Target Start/End: Original strand, 32769500 - 32769536
Alignment:
Q  6 gtagataagctcaaataagttaatccaaacaggccct 42  Q
    ||||||||||| |||||||| ||||||||||||||||    
T  32769500 gtagataagctaaaataagtcaatccaaacaggccct 32769536  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 43
Target Start/End: Complemental strand, 17988983 - 17988945
Alignment:
Q  5 agtagataagctcaaataagttaatccaaacaggccctt 43  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  17988983 agtagataagctcaaataagttaatccaaacaagccctt 17988945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 25596148 - 25596191
Alignment:
Q  1 tgctagtagataagctcaaataagttaatccaaacaggccctta 44  Q
    |||| |||||||||||||||||||| | ||||||||||||||||    
T  25596148 tgctggtagataagctcaaataagtcagtccaaacaggccctta 25596191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 5 - 56
Target Start/End: Complemental strand, 37064418 - 37064367
Alignment:
Q  5 agtagataagctcaaataagttaatccaaacaggcccttactcaagcatgtg 56  Q
    |||||||||| |||||||||| ||||||||||| |||||| | |||||||||    
T  37064418 agtagataagatcaaataagtcaatccaaacagacccttaattaagcatgtg 37064367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 40598439 - 40598404
Alignment:
Q  1 tgctagtagataagctcaaataagttaatccaaaca 36  Q
    ||||||||||||||||||||||||| ||||||||||    
T  40598439 tgctagtagataagctcaaataagtcaatccaaaca 40598404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 46
Target Start/End: Complemental strand, 28727710 - 28727672
Alignment:
Q  8 agataagctcaaataagttaatccaaacaggcccttact 46  Q
    ||||||||||||||||||||||||||| |||| ||||||    
T  28727710 agataagctcaaataagttaatccaaataggctcttact 28727672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 40252077 - 40252036
Alignment:
Q  1 tgctagtagataagctcaaataagttaatccaaacaggccct 42  Q
    ||||||||||||||||||||||||  ||| ||||||||||||    
T  40252077 tgctagtagataagctcaaataagccaattcaaacaggccct 40252036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 40
Target Start/End: Complemental strand, 4970739 - 4970707
Alignment:
Q  8 agataagctcaaataagttaatccaaacaggcc 40  Q
    |||||||||||||||||| ||||||||||||||    
T  4970739 agataagctcaaataagtcaatccaaacaggcc 4970707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 37
Target Start/End: Original strand, 30134252 - 30134284
Alignment:
Q  5 agtagataagctcaaataagttaatccaaacag 37  Q
    ||||||||||||||||||||||||| |||||||    
T  30134252 agtagataagctcaaataagttaattcaaacag 30134284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 44
Target Start/End: Complemental strand, 40371601 - 40371565
Alignment:
Q  8 agataagctcaaataagttaatccaaacaggccctta 44  Q
    |||||||||||||||||| |||||||||| |||||||    
T  40371601 agataagctcaaataagtcaatccaaacatgccctta 40371565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 12111083 - 12111129
Alignment:
Q  1 tgctagtagataagctcaaataagttaatccaaacaggcccttactc 47  Q
    ||||||||||||||||||||||||| |||||||| |||||| |||||    
T  12111083 tgctagtagataagctcaaataagtcaatccaaataggcccatactc 12111129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 32205967 - 32205928
Alignment:
Q  1 tgctagtagataagctcaaataagttaatccaaacaggcc 40  Q
    |||||||||||||| |||||||||| ||||||||||||||    
T  32205967 tgctagtagataaggtcaaataagtcaatccaaacaggcc 32205928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 2460105 - 2460067
Alignment:
Q  1 tgctagtagataagctcaaataagttaatccaaacaggc 39  Q
    |||||||  ||||||||||||||||||||||||||||||    
T  2460105 tgctagtttataagctcaaataagttaatccaaacaggc 2460067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 35
Target Start/End: Complemental strand, 738489 - 738461
Alignment:
Q  7 tagataagctcaaataagttaatccaaac 35  Q
    |||||||||||||||||||||||||||||    
T  738489 tagataagctcaaataagttaatccaaac 738461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 835215 - 835179
Alignment:
Q  1 tgctagtagataagctcaaataagttaatccaaacag 37  Q
    ||||||||||||||||||||||||  |||||||||||    
T  835215 tgctagtagataagctcaaataaggcaatccaaacag 835179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 44
Target Start/End: Complemental strand, 9109061 - 9109025
Alignment:
Q  8 agataagctcaaataagttaatccaaacaggccctta 44  Q
    |||||| ||||| ||||||||||||||||||||||||    
T  9109061 agataaactcaagtaagttaatccaaacaggccctta 9109025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 37
Target Start/End: Complemental strand, 9202935 - 9202903
Alignment:
Q  5 agtagataagctcaaataagttaatccaaacag 37  Q
    ||||||||||||||||||||| |||||||||||    
T  9202935 agtagataagctcaaataagtcaatccaaacag 9202903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 41
Target Start/End: Complemental strand, 30536915 - 30536879
Alignment:
Q  5 agtagataagctcaaataagttaatccaaacaggccc 41  Q
    ||||||||| ||||||||||| |||||||||||||||    
T  30536915 agtagataaactcaaataagtcaatccaaacaggccc 30536879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 40240775 - 40240738
Alignment:
Q  1 tgctagtagataagctcaaataagttaatccaaacagg 38  Q
    |||||||| |||||||||||||||||||||||||||||    
T  40240775 tgctagtatataagctcaaataagttaatccaaacagg 40240738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 51929857 - 51929897
Alignment:
Q  1 tgctagtagataagctcaaataagttaatccaaacaggccc 41  Q
    ||||| ||||||||||||||||||| |||||||||||||||    
T  51929857 tgctaatagataagctcaaataagtcaatccaaacaggccc 51929897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 5 - 36
Target Start/End: Complemental strand, 24684772 - 24684741
Alignment:
Q  5 agtagataagctcaaataagttaatccaaaca 36  Q
    ||||||||||||||||||||||||||||||||    
T  24684772 agtagataagctcaaataagttaatccaaaca 24684741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 584162 - 584196
Alignment:
Q  1 tgctagtagataagctcaaataagttaatccaaac 35  Q
    ||||||||||||||||||||||||| |||||||||    
T  584162 tgctagtagataagctcaaataagtcaatccaaac 584196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 44
Target Start/End: Complemental strand, 5407402 - 5407365
Alignment:
Q  7 tagataagctcaaataagttaatccaaacaggccctta 44  Q
    |||||||||||||||||| |||| ||||||||||||||    
T  5407402 tagataagctcaaataagctaatgcaaacaggccctta 5407365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 44
Target Start/End: Complemental strand, 1820079 - 1820043
Alignment:
Q  8 agataagctcaaataagttaatccaaacaggccctta 44  Q
    |||||||||||||||||  ||||||||||||||||||    
T  1820079 agataagctcaaataagccaatccaaacaggccctta 1820043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 43
Target Start/End: Complemental strand, 15304316 - 15304280
Alignment:
Q  7 tagataagctcaaataagttaatccaaacaggccctt 43  Q
    ||||||||||||||||||| ||| |||||||||||||    
T  15304316 tagataagctcaaataagtcaattcaaacaggccctt 15304280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 44014752 - 44014712
Alignment:
Q  1 tgctagtagataagctcaaataagttaatccaaacaggccc 41  Q
    ||||||||||||| ||||||||||  |||||||||||||||    
T  44014752 tgctagtagataaactcaaataagccaatccaaacaggccc 44014712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 36
Target Start/End: Original strand, 50211854 - 50211886
Alignment:
Q  4 tagtagataagctcaaataagttaatccaaaca 36  Q
    ||||||||||||| |||||||||||||||||||    
T  50211854 tagtagataagctaaaataagttaatccaaaca 50211886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 449963 - 450003
Alignment:
Q  1 tgctagtagataagctcaaataagttaatccaaacaggccc 41  Q
    ||||||||||||||||||||||||||||| |||||| ||||    
T  449963 tgctagtagataagctcaaataagttaatgcaaacatgccc 450003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 9996854 - 9996897
Alignment:
Q  1 tgctagtagataagctcaaataagttaatccaaacaggccctta 44  Q
    ||||||| ||||||||||||||||| || |||||||||||||||    
T  9996854 tgctagttgataagctcaaataagtcaagccaaacaggccctta 9996897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 5 - 40
Target Start/End: Complemental strand, 15370273 - 15370238
Alignment:
Q  5 agtagataagctcaaataagttaatccaaacaggcc 40  Q
    ||||||||||||||||||||| ||||||||||||||    
T  15370273 agtagataagctcaaataagtcaatccaaacaggcc 15370238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 10563514 - 10563472
Alignment:
Q  1 tgctagtagataagctcaaataagttaatccaaacaggccctt 43  Q
    |||| ||||||||| |||||||||| |||||||||||||||||    
T  10563514 tgctggtagataagttcaaataagtcaatccaaacaggccctt 10563472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 42
Target Start/End: Original strand, 26202151 - 26202185
Alignment:
Q  8 agataagctcaaataagttaatccaaacaggccct 42  Q
    ||||||| |||||||||||||||||||||||||||    
T  26202151 agataagttcaaataagttaatccaaacaggccct 26202185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 44
Target Start/End: Original strand, 2790356 - 2790397
Alignment:
Q  3 ctagtagataagctcaaataagttaatccaaacaggccctta 44  Q
    |||||||||||| |||||||||  ||||||||||||||||||    
T  2790356 ctagtagataagttcaaataagccaatccaaacaggccctta 2790397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 44
Target Start/End: Complemental strand, 7928246 - 7928209
Alignment:
Q  7 tagataagctcaaataagttaatccaaacaggccctta 44  Q
    ||||||||||||||||||  ||||||||||||||||||    
T  7928246 tagataagctcaaataagccaatccaaacaggccctta 7928209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 37
Target Start/End: Original strand, 18179068 - 18179101
Alignment:
Q  4 tagtagataagctcaaataagttaatccaaacag 37  Q
    |||||||||||||||||||||| |||||||||||    
T  18179068 tagtagataagctcaaataagtcaatccaaacag 18179101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 39
Target Start/End: Original strand, 27317500 - 27317533
Alignment:
Q  6 gtagataagctcaaataagttaatccaaacaggc 39  Q
    |||||||||||||||||||| |||||||||||||    
T  27317500 gtagataagctcaaataagtcaatccaaacaggc 27317533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 44
Target Start/End: Complemental strand, 28810400 - 28810363
Alignment:
Q  7 tagataagctcaaataagttaatccaaacaggccctta 44  Q
    |||| |||||||||||||| ||||||||||||||||||    
T  28810400 tagagaagctcaaataagtcaatccaaacaggccctta 28810363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 6 - 42
Target Start/End: Complemental strand, 2964758 - 2964722
Alignment:
Q  6 gtagataagctcaaataagttaatccaaacaggccct 42  Q
    ||||||||| ||||||||||||||||||||| |||||    
T  2964758 gtagataagttcaaataagttaatccaaacatgccct 2964722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 6 - 42
Target Start/End: Original strand, 4607046 - 4607082
Alignment:
Q  6 gtagataagctcaaataagttaatccaaacaggccct 42  Q
    |||||||||||||||||||  ||||||||||||||||    
T  4607046 gtagataagctcaaataagccaatccaaacaggccct 4607082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 6 - 42
Target Start/End: Complemental strand, 6772482 - 6772446
Alignment:
Q  6 gtagataagctcaaataagttaatccaaacaggccct 42  Q
    |||||||||||||||||||| |||||||||| |||||    
T  6772482 gtagataagctcaaataagtcaatccaaacatgccct 6772446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 15120299 - 15120335
Alignment:
Q  1 tgctagtagataagctcaaataagttaatccaaacag 37  Q
    |||||||||||||| |||||||||| |||||||||||    
T  15120299 tgctagtagataagttcaaataagtcaatccaaacag 15120335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 44
Target Start/End: Complemental strand, 10199359 - 10199319
Alignment:
Q  4 tagtagataagctcaaataagttaatccaaacaggccctta 44  Q
    |||||||||||||||||||||| ||||||| ||||||||||    
T  10199359 tagtagataagctcaaataagtcaatccaaccaggccctta 10199319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 5 - 44
Target Start/End: Original strand, 2295311 - 2295350
Alignment:
Q  5 agtagataagctcaaataagttaatccaaacaggccctta 44  Q
    ||||||||||||||||||||  ||||||||||||||||||    
T  2295311 agtagataagctcaaataagccaatccaaacaggccctta 2295350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 3319900 - 3319865
Alignment:
Q  1 tgctagtagataagctcaaataagttaatccaaaca 36  Q
    ||||||||||||||||||||||||| ||||||||||    
T  3319900 tgctagtagataagctcaaataagtcaatccaaaca 3319865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 37
Target Start/End: Original strand, 37431858 - 37431888
Alignment:
Q  7 tagataagctcaaataagttaatccaaacag 37  Q
    |||||||||||||||||||||||||||||||    
T  37431858 tagataagctcaaataagttaatccaaacag 37431888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 37
Target Start/End: Original strand, 52014009 - 52014039
Alignment:
Q  7 tagataagctcaaataagttaatccaaacag 37  Q
    |||||||||||||||||||||||||||||||    
T  52014009 tagataagctcaaataagttaatccaaacag 52014039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 42
Target Start/End: Complemental strand, 24460351 - 24460314
Alignment:
Q  5 agtagataagctcaaataagttaatccaaacaggccct 42  Q
    |||||||||| |||||||||| ||||||||||||||||    
T  24460351 agtagataagttcaaataagtcaatccaaacaggccct 24460314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 1565100 - 1565064
Alignment:
Q  1 tgctagtagataagctcaaataagttaatccaaacag 37  Q
    ||||||||||||| |||||| ||||||||||||||||    
T  1565100 tgctagtagataatctcaaaaaagttaatccaaacag 1565064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 2832088 - 2832120
Alignment:
Q  1 tgctagtagataagctcaaataagttaatccaa 33  Q
    |||||||||||||||||||||||| ||||||||    
T  2832088 tgctagtagataagctcaaataagctaatccaa 2832120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 30014033 - 30013997
Alignment:
Q  1 tgctagtagataagctcaaataagttaatccaaacag 37  Q
    ||||||||||||| ||||||||||| |||||||||||    
T  30014033 tgctagtagataaactcaaataagtcaatccaaacag 30013997  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 42
Target Start/End: Complemental strand, 36523233 - 36523201
Alignment:
Q  10 ataagctcaaataagttaatccaaacaggccct 42  Q
    ||||||| |||||||||||||||||||||||||    
T  36523233 ataagcttaaataagttaatccaaacaggccct 36523201  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 36
Target Start/End: Complemental strand, 50644206 - 50644174
Alignment:
Q  4 tagtagataagctcaaataagttaatccaaaca 36  Q
    |||||||||||||||||||||| ||||||||||    
T  50644206 tagtagataagctcaaataagtcaatccaaaca 50644174  T

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Target: scaffold0020 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 41
Target Start/End: Complemental strand, 159924 - 159887
Alignment:
Q  4 tagtagataagctcaaataagttaatccaaacaggccc 41  Q
    |||||||||||||||||||||  |||||||||||||||    
T  159924 tagtagataagctcaaataagccaatccaaacaggccc 159887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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