View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3024_low_12 (Length: 321)

Name: NF3024_low_12
Description: NF3024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3024_low_12
NF3024_low_12
[»] chr6 (2 HSPs)
chr6 (9-175)||(16765732-16765898)
chr6 (216-306)||(16765461-16765550)
[»] chr3 (2 HSPs)
chr3 (19-175)||(31598212-31598354)
chr3 (222-306)||(31598544-31598627)
[»] chr4 (12 HSPs)
chr4 (9-175)||(39869676-39869827)
chr4 (8-100)||(36013313-36013405)
chr4 (216-306)||(39870008-39870097)
chr4 (216-306)||(36013696-36013785)
chr4 (216-306)||(47326540-47326629)
chr4 (216-306)||(47341336-47341425)
chr4 (9-85)||(47335852-47335928)
chr4 (229-290)||(55514149-55514210)
chr4 (134-199)||(55513859-55513924)
chr4 (139-175)||(47326315-47326351)
chr4 (139-175)||(47341111-47341147)
chr4 (243-290)||(39112499-39112546)
[»] chr5 (2 HSPs)
chr5 (134-187)||(9142573-9142626)
chr5 (229-290)||(9142248-9142307)


Alignment Details
Target: chr6 (Bit Score: 131; Significance: 6e-68; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 9 - 175
Target Start/End: Complemental strand, 16765898 - 16765732
Alignment:
Q  9 accaccaccaccacactattcatctttcttctcaatcttagttttcaacatacagaagaacacaaattcactactgagttggaaaaattgagttgtgctt 108  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||||||||||  ||||||||||||||| ||||||||||||    
T  16765898 accaccaccaccacactattcatctttcctctcaatcttagttttcaacacacaaaagaacacaaattcatcactgagttggaaaaactgagttgtgctt 16765799  T
Q  109 tagaaaccatcaccaccaaaattaccagcaaacttatagacatttgtatcaataatatagatgaatc 175  Q
    ||||||||||||||||||||||||||||||||| |||||| ||||||| ||||||||||||||||||    
T  16765798 tagaaaccatcaccaccaaaattaccagcaaacatatagatatttgtaccaataatatagatgaatc 16765732  T

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Target: chr6; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 216 - 306
Target Start/End: Complemental strand, 16765550 - 16765461
Alignment:
Q  216 aactagatgttagtaaataagtaagtaattagtttgaataggtcttattttaggaacaattgggagaggaaaaaataattggtgtgaattt 306  Q
    |||| ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||||||| |||||    
T  16765550 aactggatgttagtaaatcagtaagtaattagtttgaataagtcttattttaggaacaattgggagagga-aaaatacttggtgtcaattt 16765461  T

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Target: chr3 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 19 - 175
Target Start/End: Original strand, 31598212 - 31598354
Alignment:
Q  19 ccacactattcatctttcttctcaatcttagttttcaacatacagaagaacacaaattcactactgagttggaaaaattgagttgtgctttagaaaccat 118  Q
    |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| ||              ||||||||||| |||    
T  31598212 ccacactattcatctttcctctcaatcttagttttcaacacacagaagaacacaaattcactactgagctg--------------tgctttagaaaacat 31598297  T
Q  119 caccaccaaaattaccagcaaacttatagacatttgtatcaataatatagatgaatc 175  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  31598298 caccaccaaaattaccagcaaacttatagacatttgtaccaataatatagatgaatc 31598354  T

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Target: chr3; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 222 - 306
Target Start/End: Original strand, 31598544 - 31598627
Alignment:
Q  222 atgttagtaaataagtaagtaattagtttgaataggtcttattttaggaacaattgggagaggaaaaaataattggtgtgaattt 306  Q
    |||||| |||||||||||||||||| |||||||| |||||||||||||||||||||||||||| ||||||| ||||||| |||||    
T  31598544 atgttaataaataagtaagtaattattttgaataagtcttattttaggaacaattgggagagg-aaaaatacttggtgtcaattt 31598627  T

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Target: chr4 (Bit Score: 84; Significance: 7e-40; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 9 - 175
Target Start/End: Original strand, 39869676 - 39869827
Alignment:
Q  9 accaccaccaccacactattcatctttcttctcaatcttagttttcaacatacagaagaacacaaattcactactgagttggaaaaattgagttgtgctt 108  Q
    |||||||||||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||||| ||||              ||||||||    
T  39869676 accaccaccaccacactattcatcttcct-ctcaatcttagttttcaacacacagaagaacacaaattcactaatgag--------------ttgtgctt 39869760  T
Q  109 tagaaaccatcaccaccaaaattaccagcaaacttatagacatttgtatcaataatatagatgaatc 175  Q
    |||||| ||||||||||||||||||||  ||||||||||||||||||| ||||||||||||||||||    
T  39869761 tagaaaacatcaccaccaaaattaccaaaaaacttatagacatttgtaccaataatatagatgaatc 39869827  T

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Target: chr4; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 8 - 100
Target Start/End: Original strand, 36013313 - 36013405
Alignment:
Q  8 aaccaccaccaccacactattcatctttcttctcaatcttagttttcaacatacagaagaacacaaattcactactgagttggaaaaattgag 100  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||    
T  36013313 aaccaccaccaccacactattcatctttcctctcaatcttagttttcaacacacagaagaacacaaattcactactgagttggaaaaactgag 36013405  T

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Target: chr4; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 216 - 306
Target Start/End: Original strand, 39870008 - 39870097
Alignment:
Q  216 aactagatgttagtaaataagtaagtaattagtttgaataggtcttattttaggaacaattgggagaggaaaaaataattggtgtgaattt 306  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |||||||||||||    
T  39870008 aactagatgttagtaaataagtaagtaattagtttgaataagtcttattttaggaacaattgggagagg-aaaaatacttggtgtgaattt 39870097  T

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Target: chr4; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 216 - 306
Target Start/End: Original strand, 36013696 - 36013785
Alignment:
Q  216 aactagatgttagtaaataagtaagtaattagtttgaataggtcttattttaggaacaattgggagaggaaaaaataattggtgtgaattt 306  Q
    |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |||||||||||||    
T  36013696 aactggatgttagtaaataagtaagtaattagtttgaataagtcttattttaggaacaattgggagagg-aaaaatacttggtgtgaattt 36013785  T

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Target: chr4; HSP #5
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 216 - 306
Target Start/End: Original strand, 47326540 - 47326629
Alignment:
Q  216 aactagatgttagtaaataagtaagtaattagtttgaataggtcttattttaggaacaattgggagaggaaaaaataattggtgtgaattt 306  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||||||| |||||||||||||    
T  47326540 aactggatgttagtaaataagtaagtaattagtttgaataagtcttattttaagaacaattgggagagg-aaaaatacttggtgtgaattt 47326629  T

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Target: chr4; HSP #6
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 216 - 306
Target Start/End: Original strand, 47341336 - 47341425
Alignment:
Q  216 aactagatgttagtaaataagtaagtaattagtttgaataggtcttattttaggaacaattgggagaggaaaaaataattggtgtgaattt 306  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||||||| |||||||||||||    
T  47341336 aactggatgttagtaaataagtaagtaattagtttgaataagtcttattttaagaacaattgggagagg-aaaaatacttggtgtgaattt 47341425  T

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Target: chr4; HSP #7
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 9 - 85
Target Start/End: Original strand, 47335852 - 47335928
Alignment:
Q  9 accaccaccaccacactattcatctttcttctcaatcttagttttcaacatacagaagaacacaaattcactactga 85  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||  ||||||||||||||||| || |||||    
T  47335852 accaccaccaccacactattcatctttcctctcaatcttagttttcaacgcacagaagaacacaaatttaccactga 47335928  T

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Target: chr4; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 229 - 290
Target Start/End: Original strand, 55514149 - 55514210
Alignment:
Q  229 taaataagtaagtaattagtttgaataggtcttattttaggaacaattgggagaggaaaaaa 290  Q
    ||||||| ||| ||||||||||||||| |||||||||||| |||||||||||||||||||||    
T  55514149 taaataaataaataattagtttgaataagtcttattttagaaacaattgggagaggaaaaaa 55514210  T

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Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 134 - 199
Target Start/End: Original strand, 55513859 - 55513924
Alignment:
Q  134 cagcaaacttatagacatttgtatcaataatatagatgaatcaaactccaataaatttccccaaat 199  Q
    |||||||||||||  ||| |||| |||||||||||||||||||||||||||||||| ||| |||||    
T  55513859 cagcaaacttataagcatctgtaccaataatatagatgaatcaaactccaataaatctccacaaat 55513924  T

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Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 175
Target Start/End: Original strand, 47326315 - 47326351
Alignment:
Q  139 aacttatagacatttgtatcaataatatagatgaatc 175  Q
    |||||||||||||||||| ||||||||||||||||||    
T  47326315 aacttatagacatttgtaccaataatatagatgaatc 47326351  T

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Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 175
Target Start/End: Original strand, 47341111 - 47341147
Alignment:
Q  139 aacttatagacatttgtatcaataatatagatgaatc 175  Q
    |||||||||||||||||| ||||||||||||||||||    
T  47341111 aacttatagacatttgtaccaataatatagatgaatc 47341147  T

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Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 243 - 290
Target Start/End: Complemental strand, 39112546 - 39112499
Alignment:
Q  243 attagtttgaataggtcttattttaggaacaattgggagaggaaaaaa 290  Q
    ||||||||||||| || ||||||||| |||| ||||||||||||||||    
T  39112546 attagtttgaataagttttattttagaaacagttgggagaggaaaaaa 39112499  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 134 - 187
Target Start/End: Complemental strand, 9142626 - 9142573
Alignment:
Q  134 cagcaaacttatagacatttgtatcaataatatagatgaatcaaactccaataa 187  Q
    |||||||||||||  |||||||| ||||||||||||||||||||||||||||||    
T  9142626 cagcaaacttataagcatttgtaccaataatatagatgaatcaaactccaataa 9142573  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 290
Target Start/End: Complemental strand, 9142307 - 9142248
Alignment:
Q  229 taaataagtaagtaattagtttgaataggtcttattttaggaacaattgggagaggaaaaaa 290  Q
    ||||||| ||| ||||||||||||||| ||||| ||| |  |||||||||||||||||||||    
T  9142307 taaataaataaataattagtttgaataagtcttttttga--aacaattgggagaggaaaaaa 9142248  T

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