View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3024_low_13 (Length: 320)
Name: NF3024_low_13
Description: NF3024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3024_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 141; Significance: 6e-74; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 112 - 304
Target Start/End: Complemental strand, 36202486 - 36202294
Alignment:
| Q |
112 |
gttacctgacatatgatcatttgaactccaccttcaaggaaaagggctctcctaccccacttatcaactccataaattgagacacaagtagcagcaacat |
211 |
Q |
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| T |
36202486 |
gttacctggcatatgagcatttgagcaccaccttcaaggaaaagggctctcctaccccacttatcaactccataaattgagacacaagtagcaacaacat |
36202387 |
T |
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| Q |
212 |
taacaacaccagtgatgacagcagacataagggcagcatcatccttaaacccaatggaattaaaaaacacaggtgcataaaacataataacat |
304 |
Q |
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| T |
36202386 |
taacaacaccggtgatgacagccgacataagtgaagcatcgtccttaaacccaatggaattaaatagcacaggtgcataaaacatgataacat |
36202294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 112 - 304
Target Start/End: Original strand, 35922572 - 35922764
Alignment:
| Q |
112 |
gttacctgacatatgatcatttgaactccaccttcaaggaaaagggctctcctaccccacttatcaactccataaattgagacacaagtagcagcaacat |
211 |
Q |
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||||||||||| |||| |||||||| ||||||||||| |||||||||||||||||| | ||||||||||| ||||||||| | ||| || | ||| |
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| T |
35922572 |
gttacctgacaaatgagcatttgaaggccaccttcaagaaaaagggctctcctacccaatctatcaactccaaaaattgagataatggtaccaaaagcat |
35922671 |
T |
|
| Q |
212 |
taacaacaccagtgatgacagcagacataagggcagcatcatccttaaacccaatggaattaaaaaacacaggtgcataaaacataataacat |
304 |
Q |
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||||||| ||||| || |||| |||||||||||||||||||||| |||||||| ||| |||| | |||||||||||||||||| ||||||| |
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| T |
35922672 |
taacaacgccagttatcacagatgacataagggcagcatcatcctcaaacccaacagaactaaatagcacaggtgcataaaacattataacat |
35922764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 63
Target Start/End: Original strand, 21559684 - 21559725
Alignment:
| Q |
22 |
taaaatacacctgacacatgggggtgtacatgagaggtgtat |
63 |
Q |
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| T |
21559684 |
taaaatacccctaacacatgggggtgtacataagaggtgtat |
21559725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 63
Target Start/End: Original strand, 14573118 - 14573159
Alignment:
| Q |
22 |
taaaatacacctgacacatgggggtgtacatgagaggtgtat |
63 |
Q |
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|||||||| ||| |||||||||||||||||| |||||||||| |
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| T |
14573118 |
taaaatacccctaacacatgggggtgtacataagaggtgtat |
14573159 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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