View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3024_low_15 (Length: 262)
Name: NF3024_low_15
Description: NF3024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3024_low_15 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 14 - 99
Target Start/End: Original strand, 35467331 - 35467416
Alignment:
| Q |
14 |
atatgcagatcatctaaatgatttttcttcttacaacatttcttttgaagtacatttaagtaattgtgttgaagaaagacttttag |
99 |
Q |
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| T |
35467331 |
atatgccgatcatttaaatgatttttcttcttacaacacttcttttgaagtacatttaagtaattgtgttgaagaaagtcttttag |
35467416 |
T |
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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 230 - 262
Target Start/End: Original strand, 35468301 - 35468333
Alignment:
| Q |
230 |
tgtgtttaattttaaaaagacaaaaatatcctt |
262 |
Q |
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| T |
35468301 |
tgtgtttaattttaaaaagacaaaaatatcctt |
35468333 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 230 - 262
Target Start/End: Original strand, 11523245 - 11523277
Alignment:
| Q |
230 |
tgtgtttaattttaaaaagacaaaaatatcctt |
262 |
Q |
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| T |
11523245 |
tgtgtttaattttaaaaagacaaaaatatcctt |
11523277 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 230 - 259
Target Start/End: Original strand, 27899104 - 27899133
Alignment:
| Q |
230 |
tgtgtttaattttaaaaagacaaaaatatc |
259 |
Q |
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| T |
27899104 |
tgtgtttaattttaaaaagacaaaaatatc |
27899133 |
T |
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