View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3024_low_17 (Length: 228)
Name: NF3024_low_17
Description: NF3024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3024_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 166; Significance: 5e-89; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 1 - 174
Target Start/End: Original strand, 28536676 - 28536849
Alignment:
| Q |
1 |
attacgtgtttcgaaactcgatccactctactatgtataattagtaattaccatgaaagatataaggttggccgctttgaaattccatatgaatattcaa |
100 |
Q |
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| T |
28536676 |
attacgtgtttcgaaactggatccactctactatgtataattagtaattaccatgaaagatataaggttggccgctttgaaattccatatgaatattcaa |
28536775 |
T |
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| Q |
101 |
accaaattcctatatatttgtcattgatgaaaaaataaaagctgaaaacagaatgactcctgtatattaatcat |
174 |
Q |
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| T |
28536776 |
accaaattcctgtatatttgtcattgatgaaaaaataaaagctgaaaacagaatgactcctgtatattaatcat |
28536849 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 108 - 216
Target Start/End: Original strand, 28536833 - 28536941
Alignment:
| Q |
108 |
tcctatatatttgtcattgatgaaaaaataaaagctgaaaacagaatgactcctgtatattaatcatggagttaaaccaaagggttattgatgaaattat |
207 |
Q |
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|||| |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28536833 |
tcctgtatattaatcattgatgaaaaaataaaaggtgaaaacagaatgactcctgtatattaatcatggagttaaaccaaagggttattgatgaaattat |
28536932 |
T |
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| Q |
208 |
cacaggttc |
216 |
Q |
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| T |
28536933 |
cacaggttc |
28536941 |
T |
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