View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3024_low_2 (Length: 608)
Name: NF3024_low_2
Description: NF3024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3024_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 570; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 570; E-Value: 0
Query Start/End: Original strand, 10 - 591
Target Start/End: Original strand, 43805223 - 43805804
Alignment:
| Q |
10 |
attatactaatggcaaaaaatggagaaacagtggctgcttttgaacggttctggtaaagactaactgggggcttgaagttgtcaaccaattattaaaatg |
109 |
Q |
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| T |
43805223 |
attatactaatggcaaaaaatggagaaacagtggctgcttttgaacggttctggtaaagactaactgggggcttgaagttgtcaaccaattattaaaatg |
43805322 |
T |
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| Q |
110 |
ttatcaaaacttcttttcatcttatctaccaccactttgcttatgaaaaatcagaagcagcctcattttcatcgaaaacatgtttctttcatcccttccc |
209 |
Q |
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| T |
43805323 |
ttatcaaaacttcttttcatcttatctaccaccactttgcttatgaaaaatcagaagcagcctcattttcatcgaaaacatgtttctttcatcccttccc |
43805422 |
T |
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| Q |
210 |
ctgtttctcattttcacactcatcttcattctctccgccatcaccttgttcctccgtcgtaaacaaccaaaatatgaccggagacaaccaccaggtccac |
309 |
Q |
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| T |
43805423 |
ctgtttctcattttcacactcatcttcattctctccgccatcaccttgttcctccgtcgtaaacaaccaaaatatgaccggagacaaccaccaggtccac |
43805522 |
T |
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| Q |
310 |
ggggatatccagtcatcggtaacctccacatgctgggtactctcccacaccgtgcactccaagccttgtccaaaaaacacggtcctatcatgttactacg |
409 |
Q |
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| T |
43805523 |
ggggatatccagtcatcggtaacctccacttgctgggtactctcccacaccgtgcactccaagccttgtccaaaaaacacggtcctatcatgttactacg |
43805622 |
T |
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| Q |
410 |
tttaggacaggtcccaacaatcattgtctcttcctcttcagcagcagaacaattcctcaaaacacacgacgttgttttctcttcccgtccaaaacttgaa |
509 |
Q |
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| T |
43805623 |
tttaggacaagtcccaacaatcattgtttcttcctcttcagcagcagaacaattcctcaaaacacacgacgttgttttctcttcccgtccaaaacttgaa |
43805722 |
T |
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| Q |
510 |
gccacccattatctttcttatggttctaaagggttggtttttgctgaatacggtgcctattggcgtaatatgaggaaggttt |
591 |
Q |
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| T |
43805723 |
gccacccattatctttcttatggttctaaagggttggtttttgctgaatacggtgcctattggcgtaatatgaggaaggttt |
43805804 |
T |
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