View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3024_low_4 (Length: 428)
Name: NF3024_low_4
Description: NF3024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3024_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 171; Significance: 1e-91; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 18 - 196
Target Start/End: Complemental strand, 35601543 - 35601365
Alignment:
| Q |
18 |
atgtcgggtgggttaagcgtaccgcatcatgtcataattcaagctctcttgtcacggggcccgctcaaggagaaagacttacactccatgttcgaggatc |
117 |
Q |
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| T |
35601543 |
atgtcgggtgggttaagcgtaccgcatcatgttataattcaagctctcttgtcacggggcccgctcaaggagaaagacttacactccatgttcgaggatc |
35601444 |
T |
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| Q |
118 |
tcactaagaaaaatccaggtttttctttttcctttccctgaaaatgtttacaaattgtattttcttgttgaacagttcc |
196 |
Q |
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| T |
35601443 |
tcactaagaaaaatccaggtttttctttttcctttccctgaaaatgtttacaaattgtattttcttgttgaatagttcc |
35601365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 278 - 310
Target Start/End: Complemental strand, 35601283 - 35601251
Alignment:
| Q |
278 |
cattcaaattataaccttctttttccatgatag |
310 |
Q |
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| T |
35601283 |
cattcaaattataaccttctttttccatgatag |
35601251 |
T |
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