View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3024_low_5 (Length: 405)
Name: NF3024_low_5
Description: NF3024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3024_low_5 |
 | |
|
| [»] scaffold0008 (1 HSPs) |
| | |
|
| [»] scaffold0427 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0008 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 8 - 389
Target Start/End: Complemental strand, 233657 - 233276
Alignment:
| Q |
8 |
aaattattcttgttagaaatttttctcgaacttgcaattattgtgtgaaataggtaatcatggattgaaccaaaagcacacaaacaatgacatttaatga |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
233657 |
aaattattcttgttagaaatttttctcgaacttgcaattattgtctgaaataggtaatcatggactgaactaaaagcacacaaacaatgacatttaatga |
233558 |
T |
|
| Q |
108 |
ggagaacgaagaacaaaatttggagcaattggtaaatttattaaagaaggtgaaggttactagttcttttgtggagaagctggtgaaagagccagggtac |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
233557 |
ggagaacgaagaacaaaatttggagcaattggtaaatttattaaagaaggtgaaggttactagttcttttgtggagaagctggtgaaagagccagggtac |
233458 |
T |
|
| Q |
208 |
ctcgaattccagcatgaactagagctgaagcgacaggagttgctaaggtcaaaacaggctggaaaggacgagcagattcattcagttgaaattgaaagag |
307 |
Q |
| |
|
||||||||||| |||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
233457 |
ctcgaattccatcatgaagtagagctgaagcgacaggagttgctaaagtcaaaacaggctggaaaggatgagcagattcattcagttgaaattgaaagag |
233358 |
T |
|
| Q |
308 |
agaaatctcagaacaggaaataggacgaggacgtaccgctagagtataattatttgcataatgttttaaagaagtaccaaat |
389 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
233357 |
agaaatctcagaacatgaaataggacgaggacgtaccgctagagtataattctttgcataatgttttaaagaagtaccaaat |
233276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 142; Significance: 2e-74; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 8 - 304
Target Start/End: Original strand, 20550060 - 20550357
Alignment:
| Q |
8 |
aaattattctt-gttagaaatttttctcgaacttgcaattattgtgtgaaataggtaatcatggattgaaccaaaagcacacaaacaatgacatttaatg |
106 |
Q |
| |
|
||||||||||| ||||| ||| |||||||||||| ||||||||||||||||||||||| |||||| | ||||||||||||| |||||||| | |||| |
|
|
| T |
20550060 |
aaattattctttgttaggaatatttctcgaacttacaattattgtgtgaaataggtaaccatggactcaaccaaaagcacataaacaatggtaccaaatg |
20550159 |
T |
|
| Q |
107 |
aggagaacgaagaacaaaatttggagcaattggtaaatttattaaagaaggtgaaggttactagttcttttgtggagaagctggtgaaagagccagggta |
206 |
Q |
| |
|
|||||| ||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||| |||||||||||| |||||||||||| || |
|
|
| T |
20550160 |
aggagaccgaagaacaaaatttcgagcaattggtaaagttattaaagaatgtgaaggttactagttcttttatggagaagctggagaaagagccaggata |
20550259 |
T |
|
| Q |
207 |
cctcgaattccagcatgaactagagctgaagcgacaggagttgctaaggtcaaaacaggctggaaaggacgagcagattcattcagttgaaattgaaa |
304 |
Q |
| |
|
||| ||||||||||| ||| |||||||||||||| ||||| | | ||||||||| |||||||| |||||| || |||||| || || ||||||| |
|
|
| T |
20550260 |
ccttgaattccagcaagaagcggagctgaagcgacaatagttgtttaagtcaaaacaagctggaaaagacgagtaggctcattcggtagacattgaaa |
20550357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 8 - 319
Target Start/End: Original strand, 24317895 - 24318205
Alignment:
| Q |
8 |
aaattattcttgttagaaatttttctcgaacttgcaattattgtgtgaaataggtaatcatggattgaaccaaaagcacacaaacaatgacatttaatga |
107 |
Q |
| |
|
|||||||||||| |||||||||||||||| |||||||||||||||||| |||||| |||||| | ||||||||||||| || ||||| || | | | |
|
|
| T |
24317895 |
aaattattcttgaaagaaatttttctcgaaaatgcaattattgtgtgaaa-aggtaaccatggaatcaaccaaaagcacataatcaatggcaacttaaaa |
24317993 |
T |
|
| Q |
108 |
ggagaacgaagaacaaaatttggagcaattggtaaatttattaaagaaggtgaaggttactagttcttttgtggagaagctggtgaaagagccagggtac |
207 |
Q |
| |
|
||| |||||||| ||| |||||||| || | |||||| |||||||||| ||||||||||||| |||||||||||| |||| ||||||| | || ||| |
|
|
| T |
24317994 |
ggactcagaagaacataatctggagcaactgatcaatttactaaagaaggttaaggttactagttgttttgtggagaatctggagaaagagtcgggatac |
24318093 |
T |
|
| Q |
208 |
ctcgaattccagcatgaactagagctgaagcgacaggagttgctaaggtcaaaacaggctggaaaggacgagcagattcattcagttgaaattgaaagag |
307 |
Q |
| |
|
|||||||| ||||| ||| |||| || |||||||| |||||| | | |||||||| ||||||||||||||||| |||||||| || ||| | ||||||| |
|
|
| T |
24318094 |
ctcgaatttcagcaagaagtagatctaaagcgacaagagttgttgaaatcaaaacaagctggaaaggacgagcaaattcattcggtggaagtagaaagag |
24318193 |
T |
|
| Q |
308 |
agaaatctcaga |
319 |
Q |
| |
|
||| | |||||| |
|
|
| T |
24318194 |
agacacctcaga |
24318205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 119 - 290
Target Start/End: Original strand, 24187896 - 24188067
Alignment:
| Q |
119 |
aacaaaatttggagcaattggtaaatttattaaagaaggtgaaggttactagttcttttgtggagaagctggtgaaagagccagggtacctcgaattcca |
218 |
Q |
| |
|
||||||||| |||||| ||| | || ||| |||||||||||||||||||||||||||||||| ||||| ||| |||||||| || ||||| ||||| || |
|
|
| T |
24187896 |
aacaaaattcggagcagttgatcaaattactaaagaaggtgaaggttactagttcttttgtgaagaagttggaaaaagagccgggataccttgaatttca |
24187995 |
T |
|
| Q |
219 |
gcatgaactagagctgaagcgacaggagttgctaaggtcaaaacaggctggaaaggacgagcagattcattc |
290 |
Q |
| |
|
||| || || ||| ||||||| |||||| | | ||||||||| |||||||||||||| || |||||||| |
|
|
| T |
24187996 |
gcaagaggcaggactgcagcgacaagagttgttgaagtcaaaacaagctggaaaggacgaacatattcattc |
24188067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 8 - 82
Target Start/End: Original strand, 24187800 - 24187873
Alignment:
| Q |
8 |
aaattattcttgttagaaatttttctcgaacttgcaattattgtgtgaaataggtaatcatggattgaaccaaaa |
82 |
Q |
| |
|
|||| ||| ||||||||| ||||||||||||||| |||||||||||||||||||||| ||| || | |||||||| |
|
|
| T |
24187800 |
aaataatttttgttagaa-tttttctcgaacttgaaattattgtgtgaaataggtaaccattgaatcaaccaaaa |
24187873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 8 - 38
Target Start/End: Complemental strand, 17430676 - 17430646
Alignment:
| Q |
8 |
aaattattcttgttagaaatttttctcgaac |
38 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
17430676 |
aaattattcttgttagaaatttttctcgaac |
17430646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 126; Significance: 7e-65; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 8 - 249
Target Start/End: Original strand, 16230697 - 16230937
Alignment:
| Q |
8 |
aaattattcttgttagaaatttttctcgaacttgcaattattgtgtgaaataggtaatcatggattgaaccaaaagcacacaaacaatgacatttaatga |
107 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||||||||| | |||||| || ||||| |
|
|
| T |
16230697 |
aaattattcttgtcagaaatttttctcgaacttgcaattattgtgtgaaataggtaaccatggactcaaccaaaagcacaaagacaatggcaacaaatga |
16230796 |
T |
|
| Q |
108 |
ggagaacgaagaacaaaatttggagcaattggtaaatttattaaagaaggtgaaggttactagttcttttgtggagaagctggtgaaagagccagggtac |
207 |
Q |
| |
|
|||| |||| ||||||||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||| || ||||||| |||||||||| | ||| |
|
|
| T |
16230797 |
agagatcgaaaaacaaaattgggagcaattggtaaagttactaaagaaggtgaaggttactagttcttttgtagaaaagctggagaaagagccatgatac |
16230896 |
T |
|
| Q |
208 |
ctcgaattccagcatgaactagagctgaagcgacaggagttg |
249 |
Q |
| |
|
| ||||||| ||| ||| | |||||||||||||| |||||| |
|
|
| T |
16230897 |
attgaattcc-gcaagaagttgagctgaagcgacaagagttg |
16230937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 11 - 96
Target Start/End: Original strand, 3398553 - 3398638
Alignment:
| Q |
11 |
ttattcttgttagaaatttttctcgaacttgcaattattgtgtgaaataggtaatcatggattgaaccaaaagcacacaaacaatg |
96 |
Q |
| |
|
||||||| ||||| || || |||| |||||||||||||||||||||||||||||||||| | | ||||||||| |||||| ||||| |
|
|
| T |
3398553 |
ttattctcgttaggaaattatctcaaacttgcaattattgtgtgaaataggtaatcatgtaatcaaccaaaagtacacaatcaatg |
3398638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 11 - 69
Target Start/End: Original strand, 3387132 - 3387190
Alignment:
| Q |
11 |
ttattcttgttagaaatttttctcgaacttgcaattattgtgtgaaataggtaatcatg |
69 |
Q |
| |
|
||||||| ||||| || |||||||||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
3387132 |
ttattctcgttaggaaattttctcgaatttgaaattattgtgtgaaataggtaatcatg |
3387190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 97; Significance: 1e-47; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 8 - 183
Target Start/End: Original strand, 26825890 - 26826066
Alignment:
| Q |
8 |
aaattattcttgt-tagaaatttttctcgaacttgcaattattgtgtgaaataggtaatcatggattgaaccaaaagcacacaaacaatgacatttaatg |
106 |
Q |
| |
|
|||||||||||| ||| ||||||| ||||| |||||||||||||||||||||||||| ||||| | ||||||||| |||| |||||||||| | |||| |
|
|
| T |
26825890 |
aaattattcttggataggaatttttttcgaagttgcaattattgtgtgaaataggtaacaatggaatcaaccaaaaggacaccaacaatgacaatcaatg |
26825989 |
T |
|
| Q |
107 |
aggagaacgaagaacaaaatttggagcaattggtaaatttattaaagaaggtgaaggttactagttcttttgtggag |
183 |
Q |
| |
|
||| | ||||||||| |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26825990 |
aggcaaccgaagaacataatttgaagcaattgataaatttattaaagaaggtgaaggttactagttcttttgtggag |
26826066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 11 - 289
Target Start/End: Complemental strand, 24537561 - 24537283
Alignment:
| Q |
11 |
ttattcttgttagaaatttttctcgaacttgcaattattgtgtgaaataggtaatcatggattgaaccaaaagcacacaaacaatgacatttaatgagga |
110 |
Q |
| |
|
||||| ||||||| || ||||||||||| ||||||||||||||||||||||||| |||||| | |||||||| ||||| | |||||||| | | ||||| |
|
|
| T |
24537561 |
ttattattgttaggaaattttctcgaacctgcaattattgtgtgaaataggtaaccatggaatcaaccaaaaacacacgatcaatgacagctgaagagga |
24537462 |
T |
|
| Q |
111 |
gaacgaagaacaaaatttggagcaattggtaaatttattaaagaaggtgaaggttactagttcttttgtggagaagctggtgaaagagccagggtacctc |
210 |
Q |
| |
|
|| || || |||||| | |||||| || | | |||| | |||||||| ||||| ||| |||||||||||||||| ||| |||||||||||||||||| |
|
|
| T |
24537461 |
gatggaggatcaaaatctagagcaagtgatcactttactcaagaaggtaaaggtgacttcttcttttgtggagaagttggagaaagagccagggtacctt |
24537362 |
T |
|
| Q |
211 |
gaattccagcatgaactagagctgaagcgacaggagttgctaaggtcaaaacaggctggaaaggacgagcagattcatt |
289 |
Q |
| |
|
||||| ||||| ||| |||| | |||||||| ||||||| | |||||| || |||||||| || ||||||||||||| |
|
|
| T |
24537361 |
gaatttcagcaagaagtagatttaaagcgacaagagttgcggaagtcaaaccaagctggaaaagaagagcagattcatt |
24537283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 179 - 319
Target Start/End: Original strand, 26827267 - 26827407
Alignment:
| Q |
179 |
tggagaagctggtgaaagagccagggtacctcgaattccagcatgaactagagctgaagcgacaggagttgctaaggtcaaaacaggctggaaaggacga |
278 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||||||||||| ||| | |||||||||||||| |||||| | ||||||||| |||||||| ||||| |
|
|
| T |
26827267 |
tggagaagctggagaaagagccagggtaccatgaattccagcaagaagtggagctgaagcgacaagagttgatgcagtcaaaacaagctggaaaagacga |
26827366 |
T |
|
| Q |
279 |
gcagattcattcagttgaaattgaaagagagaaatctcaga |
319 |
Q |
| |
|
|||| |||| || || || |||||||| ||||| |||||| |
|
|
| T |
26827367 |
gcaggttcaatcggtggacattgaaaggaagaaacctcaga |
26827407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0427 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0427
Description:
Target: scaffold0427; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 17 - 284
Target Start/End: Original strand, 4747 - 5014
Alignment:
| Q |
17 |
ttgttagaaatttttctcgaacttgcaattattgtgtgaaataggtaatcatggattgaaccaaaagcacacaaacaatgacatttaatgaggagaacga |
116 |
Q |
| |
|
||||||| || ||||||||||||||||| ||| |||||||||| || | |||||| | |||||||| ||||| ||||||| ||| ||||||| || |
|
|
| T |
4747 |
ttgttaggaaattttctcgaacttgcaactatggtgtgaaatatgttagcatggaatcaaccaaaaaggcacaagcaatgactactaaagaggagatgga |
4846 |
T |
|
| Q |
117 |
agaacaaaatttggagcaattggtaaatttattaaagaaggtgaaggttactagttcttttgtggagaagctggtgaaagagccagggtacctcgaattc |
216 |
Q |
| |
|
||||||||||| |||||| ||| | | ||| |||||||| ||||| || | |||||||||||||||||||| |||||| | || ||||||||||| |
|
|
| T |
4847 |
agaacaaaattgggagcacttgatctcctcattcaagaaggttaaggtgacgacttcttttgtggagaagctggaaaaagagtcgggatacctcgaattt |
4946 |
T |
|
| Q |
217 |
cagcatgaactagagctgaagcgacaggagttgctaaggtcaaaacaggctggaaaggacgagcagat |
284 |
Q |
| |
|
|||| ||| |||| | |||||| | |||||| | | ||||| ||| ||| |||| || |||||||| |
|
|
| T |
4947 |
tagcaagaagtagatataaagcgataagagttgttgaagtcaacacaagctcgaaaagatgagcagat |
5014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 17 - 71
Target Start/End: Original strand, 24253080 - 24253134
Alignment:
| Q |
17 |
ttgttagaaatttttctcgaacttgcaattattgtgtgaaataggtaatcatgga |
71 |
Q |
| |
|
||||||| || |||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
24253080 |
ttgttaggaaattttctcgaacttgtgattattgtgtgaaataggtaatcatgga |
24253134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 67
Target Start/End: Original strand, 22566941 - 22566991
Alignment:
| Q |
17 |
ttgttagaaatttttctcgaacttgcaattattgtgtgaaataggtaatca |
67 |
Q |
| |
|
||||||| || ||||||||| |||| |||||||||||||||||||||||| |
|
|
| T |
22566941 |
ttgttaggaaattttctcgagcttgtgattattgtgtgaaataggtaatca |
22566991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 12 - 55
Target Start/End: Original strand, 29652685 - 29652728
Alignment:
| Q |
12 |
tattcttgttagaaatttttctcgaacttgcaattattgtgtga |
55 |
Q |
| |
|
|||||||||||| || |||||||||||||||||||||||||||| |
|
|
| T |
29652685 |
tattcttgttaggaaattttctcgaacttgcaattattgtgtga |
29652728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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