View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3024_low_6 (Length: 403)

Name: NF3024_low_6
Description: NF3024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3024_low_6
NF3024_low_6
[»] chr6 (5 HSPs)
chr6 (148-403)||(2037946-2038204)
chr6 (22-147)||(945054-945180)
chr6 (20-144)||(7124337-7124462)
chr6 (83-147)||(12477911-12477975)
chr6 (42-138)||(4181221-4181317)
[»] chr1 (7 HSPs)
chr1 (20-147)||(49410477-49410605)
chr1 (20-144)||(47036220-47036345)
chr1 (75-146)||(22105393-22105464)
chr1 (54-144)||(45319610-45319700)
chr1 (85-150)||(52382615-52382680)
chr1 (72-144)||(45346267-45346339)
chr1 (72-144)||(12983549-12983621)
[»] chr5 (9 HSPs)
chr5 (20-147)||(6767925-6768053)
chr5 (20-144)||(40321449-40321574)
chr5 (20-144)||(41405995-41406120)
chr5 (20-144)||(1835969-1836094)
chr5 (20-144)||(31480463-31480588)
chr5 (42-144)||(39885814-39885916)
chr5 (72-150)||(24782706-24782784)
chr5 (82-147)||(20174061-20174126)
chr5 (100-148)||(32720174-32720222)
[»] chr4 (9 HSPs)
chr4 (20-153)||(24226864-24226998)
chr4 (42-149)||(15530058-15530165)
chr4 (19-144)||(45988119-45988245)
chr4 (42-144)||(42063006-42063108)
chr4 (20-144)||(47028103-47028228)
chr4 (80-147)||(28683092-28683158)
chr4 (72-144)||(20135440-20135512)
chr4 (85-144)||(4922544-4922603)
chr4 (75-143)||(55917405-55917473)
[»] chr8 (6 HSPs)
chr8 (20-147)||(30089139-30089270)
chr8 (20-144)||(13800643-13800768)
chr8 (23-157)||(3877559-3877694)
chr8 (42-139)||(1786494-1786591)
chr8 (74-145)||(30936662-30936734)
chr8 (72-144)||(533713-533785)
[»] chr3 (11 HSPs)
chr3 (20-144)||(12945429-12945554)
chr3 (20-144)||(33213418-33213543)
chr3 (21-144)||(29835735-29835859)
chr3 (42-144)||(29702392-29702494)
chr3 (20-148)||(55406336-55406464)
chr3 (20-144)||(20108021-20108146)
chr3 (42-97)||(53284241-53284296)
chr3 (42-144)||(5234704-5234806)
chr3 (72-149)||(39831199-39831276)
chr3 (75-150)||(31654613-31654689)
chr3 (85-149)||(50359480-50359544)
[»] chr7 (7 HSPs)
chr7 (18-151)||(6444115-6444249)
chr7 (54-144)||(34095842-34095932)
chr7 (42-144)||(47329643-47329745)
chr7 (72-153)||(45974452-45974533)
chr7 (72-144)||(29245281-29245353)
chr7 (74-147)||(29263416-29263490)
chr7 (107-147)||(8419403-8419443)
[»] chr2 (10 HSPs)
chr2 (54-147)||(30778292-30778385)
chr2 (23-144)||(33751509-33751631)
chr2 (23-149)||(7091068-7091195)
chr2 (42-149)||(37080704-37080811)
chr2 (72-148)||(17692623-17692699)
chr2 (72-144)||(16431880-16431952)
chr2 (72-144)||(37259674-37259746)
chr2 (72-144)||(14805577-14805649)
chr2 (85-144)||(14102006-14102065)
chr2 (72-122)||(15332762-15332812)
[»] scaffold0896 (1 HSPs)
scaffold0896 (20-144)||(1902-2027)
[»] scaffold0662 (1 HSPs)
scaffold0662 (20-144)||(6982-7107)
[»] scaffold0166 (1 HSPs)
scaffold0166 (72-150)||(25089-25167)
[»] scaffold0685 (1 HSPs)
scaffold0685 (85-150)||(6628-6693)


Alignment Details
Target: chr6 (Bit Score: 172; Significance: 3e-92; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 148 - 403
Target Start/End: Complemental strand, 2038204 - 2037946
Alignment:
Q  148 aaattataaaccttcaaaaagcatatgattaaatacttacaataaggccttgcattaagctaagcaacatccaaacattaaaagcacttttctagtcc-a 246  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  2038204 aaattataaaccttcaaaa-gcatatgattaaatacttacaataaggccttgcattaagctaagcaacatccaaacattaaaagcacttttctagtccca 2038106  T
Q  247 aagttaacaacatttaaacaagcacaaactatacaagaaatgtcacagaagaaatttaatt------------ggaacctttgttacagctaaaatcttc 334  Q
    |||||||         |||||||||||||||||||||||||||||||||||||||||||||            |||||||||||||||||||||||| ||    
T  2038105 aagttaa---------aacaagcacaaactatacaagaaatgtcacagaagaaatttaattagaaatttaattggaacctttgttacagctaaaatcatc 2038015  T
Q  335 aaatttttactagctgaaggcaaaggcatgagtcatgtatcctgctgctagttgaacattatttaatct 403  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  2038014 aaatttttactagctgaaggcaaaggcatgagtcatgtatgctgctgctagttgaacattatttaatct 2037946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 22 - 147
Target Start/End: Original strand, 945054 - 945180
Alignment:
Q  22 catattgagcag-tacacagtacataccatgccacaatcagcacacatgacatgtggcacattattattagttgtaggataacttcaccgaaaaagtcaa 120  Q
    |||||||||||| ||||||||| ||  ||||| ||||||||||||||||||||||| | ||||||||||   |||||  |||||||| | ||||||||||    
T  945054 catattgagcaggtacacagtaaatttcatgcaacaatcagcacacatgacatgtgacgcattattattgaatgtagagtaacttcatcaaaaaagtcaa 945153  T
Q  121 ttaaagaaattcaccatagaattttcc 147  Q
    || | ||| ||||||||||||||||||    
T  945154 ttgaggaacttcaccatagaattttcc 945180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 20 - 144
Target Start/End: Complemental strand, 7124462 - 7124337
Alignment:
Q  20 aacatattgagcag-tacacagtacataccatgccacaatcagcacacatgacatgtggcacattattattagttgtaggataacttcaccgaaaaagtc 118  Q
    |||||||| ||||| |||| | |||||||||| | ||||||| ||||||||||||||||| ||||||||||   |||||||||||||||| |||||||||    
T  7124462 aacatatttagcaggtacatactacataccattcaacaatcaacacacatgacatgtggcgcattattattgaatgtaggataacttcactgaaaaagtc 7124363  T
Q  119 aattaaagaaattcaccatagaattt 144  Q
    |||| ||  | |||||| ||||||||    
T  7124362 aattgaatgacttcaccgtagaattt 7124337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 83 - 147
Target Start/End: Original strand, 12477911 - 12477975
Alignment:
Q  83 tattattagttgtaggataacttcaccgaaaaagtcaattaaagaaattcaccatagaattttcc 147  Q
    |||||||||||||| | | ||||||||| ||||||||||| ||||| ||||||||| ||||||||    
T  12477911 tattattagttgtatggttacttcaccggaaaagtcaattgaagaacttcaccataaaattttcc 12477975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 138
Target Start/End: Original strand, 4181221 - 4181317
Alignment:
Q  42 acataccatgccacaatcagcacacatgacatgtggcacattattattagttgtaggataacttcaccgaaaaagtcaattaaagaaattcaccata 138  Q
    |||||| |||| ||||| | |||||||||||  || | |||||||||| | |||||||||||||||   |||||||||||| || || |||||||||    
T  4181221 acatactatgcaacaataaacacacatgacacatgacgcattattattggatgtaggataacttcataaaaaaagtcaattgaataacttcaccata 4181317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 85; Significance: 2e-40; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 20 - 147
Target Start/End: Original strand, 49410477 - 49410605
Alignment:
Q  20 aacatattgagcag-tacacagtacataccatgccacaatcagcacacatgacatgtggcacattattattagttgtaggataacttcaccgaaaaagtc 118  Q
    |||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||| | |||||| |||||||||||||||||||    
T  49410477 aacatattgagcaggtacacggtacataccattccacaatcagcacacatgacatgtggcgcattattattggatgtagggtaacttcaccgaaaaagtc 49410576  T
Q  119 aattaaagaaattcaccatagaattttcc 147  Q
    | || ||||| ||||||||||||||||||    
T  49410577 atttgaagaacttcaccatagaattttcc 49410605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 20 - 144
Target Start/End: Original strand, 47036220 - 47036345
Alignment:
Q  20 aacatattgagcag-tacacagtacataccatgccacaatcagcacacatgacatgtggcacattattattagttgtaggataacttcaccgaaaaagtc 118  Q
    |||||||| ||||| |||||| |||||||||||| |||||||| |||||||||||||| | |||||||||| | |||| | ||||||||  ||| |||||    
T  47036220 aacatattaagcaggtacacaatacataccatgcaacaatcagaacacatgacatgtgacgcattattattggatgtatggtaacttcattgaagaagtc 47036319  T
Q  119 aattaaagaaattcaccatagaattt 144  Q
    |||| ||  | |||||||||||||||    
T  47036320 aattgaatgacttcaccatagaattt 47036345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 75 - 146
Target Start/End: Complemental strand, 22105464 - 22105393
Alignment:
Q  75 tggcacattattattagttgtaggataacttcaccgaaaaagtcaattaaagaaattcaccatagaattttc 146  Q
    |||| |||||||||| | |||||||||||||||||||||||||||||| ||||| |||| ||||||| ||||    
T  22105464 tggcgcattattattggatgtaggataacttcaccgaaaaagtcaattgaagaacttcatcatagaactttc 22105393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 54 - 144
Target Start/End: Complemental strand, 45319700 - 45319610
Alignment:
Q  54 acaatcagcacacatgacatgtggcacattattattagttgtaggataacttcaccgaaaaagtcaattaaagaaattcaccatagaattt 144  Q
    ||||||| |||| |||||| ||||| ||||||||||   |||| |||||||||||| |||||||||||| ||  | |||||||||||||||    
T  45319700 acaatcaacacaaatgacacgtggcgcattattattgaatgtaagataacttcaccaaaaaagtcaattgaatgacttcaccatagaattt 45319610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 85 - 150
Target Start/End: Complemental strand, 52382680 - 52382615
Alignment:
Q  85 ttattagttgtaggataacttcaccgaaaaagtcaattaaagaaattcaccatagaattttccaaa 150  Q
    ||||||| |||||||| ||||||||||| |||||| || || || ||||||||||||||| |||||    
T  52382680 ttattagctgtaggattacttcaccgaagaagtcattttaacaacttcaccatagaatttcccaaa 52382615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 144
Target Start/End: Complemental strand, 45346339 - 45346267
Alignment:
Q  72 atgtggcacattattattagttgtaggataacttcaccgaaaaagtcaattaaagaaattcaccatagaattt 144  Q
    ||||||| |||||||||| | |||||||||||||| | ||||||||||||| ||  | |||||| ||||||||    
T  45346339 atgtggcgcattattattggatgtaggataacttctctgaaaaagtcaatttaatgacttcaccgtagaattt 45346267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 72 - 144
Target Start/End: Original strand, 12983549 - 12983621
Alignment:
Q  72 atgtggcacattattattagttgtaggataacttcaccgaaaaagtcaattaaagaaattcaccatagaattt 144  Q
    ||||||| ||||||||||   |||||||||||||| | ||||||||||||| |   | |||||||||||||||    
T  12983549 atgtggcgcattattattgaatgtaggataacttctctgaaaaagtcaatttattgacttcaccatagaattt 12983621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 77; Significance: 1e-35; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 20 - 147
Target Start/End: Complemental strand, 6768053 - 6767925
Alignment:
Q  20 aacatattgagcag-tacacagtacataccatgccacaatcagcacacatgacatgtggcacattattattagttgtaggataacttcaccgaaaaagtc 118  Q
    |||||||||||||| ||||| ||||||||||| ||||||| ||||||||||||||||||| |||||||||| | |||||  |||||||||||||||||||    
T  6768053 aacatattgagcaggtacacggtacataccattccacaattagcacacatgacatgtggcgcattattattggatgtagagtaacttcaccgaaaaagtc 6767954  T
Q  119 aattaaagaaattcaccatagaattttcc 147  Q
    |||| | ||| ||||||||||||||||||    
T  6767953 aattgaggaacttcaccatagaattttcc 6767925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 20 - 144
Target Start/End: Original strand, 40321449 - 40321574
Alignment:
Q  20 aacatattgagcag-tacacagtacataccatgccacaatcagcacacatgacatgtggcacattattattagttgtaggataacttcaccgaaaaagtc 118  Q
    |||||||||||||| ||||| ||||||||||| |||||||  |||||||||||||||||| |||||||||| | ||||||||||||||| ||||||||||    
T  40321449 aacatattgagcaggtacacggtacataccattccacaatttgcacacatgacatgtggcgcattattattggatgtaggataacttcatcgaaaaagtc 40321548  T
Q  119 aattaaagaaattcaccatagaattt 144  Q
    |||| || || |||||||||||||||    
T  40321549 aattgaacaacttcaccatagaattt 40321574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 20 - 144
Target Start/End: Complemental strand, 41406120 - 41405995
Alignment:
Q  20 aacatattgagcag-tacacagtacataccatgccacaatcagcacacatgacatgtggcacattattattagttgtaggataacttcaccgaaaaagtc 118  Q
    |||||||||||||| ||||| ||||||||||| |||||||  |||||||||||||||||| |||||||||| | ||||||||||||||| ||||||||||    
T  41406120 aacatattgagcaggtacacggtacataccattccacaatttgcacacatgacatgtggcgcattattattggatgtaggataacttcatcgaaaaagtc 41406021  T
Q  119 aattaaagaaattcaccatagaattt 144  Q
    |||| || || |||||||||||||||    
T  41406020 aattgaacaacttcaccatagaattt 41405995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 20 - 144
Target Start/End: Original strand, 1835969 - 1836094
Alignment:
Q  20 aacatattgagcag-tacacagtacataccatgccacaatcagcacacatgacatgtggcacattattattagttgtaggataacttcaccgaaaaagtc 118  Q
    |||||||||||||| ||||| ||||||||||| |||||||  |||||||||||||||||| |||||||||| | ||||||||||||||| ||||||| ||    
T  1835969 aacatattgagcaggtacacggtacataccattccacaatttgcacacatgacatgtggcgcattattattggatgtaggataacttcatcgaaaaaatc 1836068  T
Q  119 aattaaagaaattcaccatagaattt 144  Q
    |||| || || |||||||||||||||    
T  1836069 aattgaacaacttcaccatagaattt 1836094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 20 - 144
Target Start/End: Complemental strand, 31480588 - 31480463
Alignment:
Q  20 aacatattgagcag-tacacagtacataccatgccacaatcagcacacatgacatgtggcacattattattagttgtaggataacttcaccgaaaaagtc 118  Q
    |||||||||||||| |||||| |||||||||||| ||||||||||||||||||||||| | |||||||||| | |||||| |||||||||||||||||||    
T  31480588 aacatattgagcaggtacacaatacataccatgcaacaatcagcacacatgacatgtgacgcattattattggatgtagggtaacttcaccgaaaaagtc 31480489  T
Q  119 aattaaagaaattcaccatagaattt 144  Q
    |||| ||  | ||| |||||||||||    
T  31480488 aattgaatgacttctccatagaattt 31480463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 42 - 144
Target Start/End: Original strand, 39885814 - 39885916
Alignment:
Q  42 acataccatgccacaatcagcacacatgacatgtggcacattattattagttgtaggataacttcaccgaaaaagtcaattaaagaaattcaccatagaa 141  Q
    |||||| |||| ||||||||||||||||||||||||||||||||||||   | |||| ||||||||||||||||||||||| || || ||||||||||||    
T  39885814 acatactatgcaacaatcagcacacatgacatgtggcacattattattgaatttagggtaacttcaccgaaaaagtcaattgaacaacttcaccatagaa 39885913  T
Q  142 ttt 144  Q
    |||    
T  39885914 ttt 39885916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 72 - 150
Target Start/End: Complemental strand, 24782784 - 24782706
Alignment:
Q  72 atgtggcacattattattagttgtaggataacttcaccgaaaaagtcaattaaagaaattcaccatagaattttccaaa 150  Q
    ||||||| |||||||||| | |||||||||||||| | ||||||||||||| ||  | ||||||||||||||| |||||    
T  24782784 atgtggcgcattattattggatgtaggataacttctctgaaaaagtcaatttaatgacttcaccatagaatttcccaaa 24782706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 82 - 147
Target Start/End: Original strand, 20174061 - 20174126
Alignment:
Q  82 ttattattagttgtaggataacttcaccgaaaaagtcaattaaagaaattcaccatagaattttcc 147  Q
    |||||||||| |||||| | |||||||||||||||||||||   ||| ||||||||||||||||||    
T  20174061 ttattattagctgtagggttacttcaccgaaaaagtcaattttcgaacttcaccatagaattttcc 20174126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 148
Target Start/End: Original strand, 32720174 - 32720222
Alignment:
Q  100 taacttcaccgaaaaagtcaattaaagaaattcaccatagaattttcca 148  Q
    ||||||||||||||||||||||| || || || ||| ||||||||||||    
T  32720174 taacttcaccgaaaaagtcaattgaataactttaccgtagaattttcca 32720222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 2e-34; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 20 - 153
Target Start/End: Complemental strand, 24226998 - 24226864
Alignment:
Q  20 aacatattgagcag-tacacagtacataccatgccacaatcagcacacatgacatgtggcacattattattagttgtaggataacttcaccgaaaaagtc 118  Q
    |||||||||||||| ||||| ||||||||||| |||||||  |||||||||||||||||| |||||||||| | ||||||||||||||| ||||||||||    
T  24226998 aacatattgagcagatacacggtacataccattccacaatttgcacacatgacatgtggcgcattattattggatgtaggataacttcatcgaaaaagtc 24226899  T
Q  119 aattaaagaaattcaccatagaattttccaaatta 153  Q
    |||| || || ||||||||||||||| || |||||    
T  24226898 aattgaacaacttcaccatagaatttccctaatta 24226864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 42 - 149
Target Start/End: Complemental strand, 15530165 - 15530058
Alignment:
Q  42 acataccatgccacaatcagcacacatgacatgtggcacattattattagttgtaggataacttcaccgaaaaagtcaattaaagaaattcaccatagaa 141  Q
    |||||| |||| ||||||||||||||||||||||| |||||| |||||   | |||| ||||||||||||||||||||||| || || ||||||||||||    
T  15530165 acatactatgcaacaatcagcacacatgacatgtgacacatttttattgaatttagggtaacttcaccgaaaaagtcaattgaacaacttcaccatagaa 15530066  T
Q  142 ttttccaa 149  Q
    ||| ||||    
T  15530065 tttcccaa 15530058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 19 - 144
Target Start/End: Complemental strand, 45988245 - 45988119
Alignment:
Q  19 aaacatattgagcag-tacacagtacataccatgccacaatcagcacacatgacatgtggcacattattattagttgtaggataacttcaccgaaaaagt 117  Q
    ||||||||| ||||| |||| | ||| |||||| | ||||||| ||||||||||||||||| ||| ||||||   |||||||||||||||||||||||||    
T  45988245 aaacatatttagcaggtacatactacgtaccattcaacaatcaacacacatgacatgtggcgcatcattattgaatgtaggataacttcaccgaaaaagt 45988146  T
Q  118 caattaaagaaattcaccatagaattt 144  Q
    ||||| ||  | ||||||||| |||||    
T  45988145 caattgaatgacttcaccataaaattt 45988119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 42 - 144
Target Start/End: Complemental strand, 42063108 - 42063006
Alignment:
Q  42 acataccatgccacaatcagcacacatgacatgtggcacattattattagttgtaggataacttcaccgaaaaagtcaattaaagaaattcaccatagaa 141  Q
    ||||||||| | ||||||| ||||||||||| |||||  |||||||||   ||||||||||||||||| |||||||||||| ||  | ||||||||||||    
T  42063108 acataccattcaacaatcaacacacatgacacgtggcgtattattattgaatgtaggataacttcaccaaaaaagtcaattgaatgacttcaccatagaa 42063009  T
Q  142 ttt 144  Q
    |||    
T  42063008 ttt 42063006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 20 - 144
Target Start/End: Complemental strand, 47028228 - 47028103
Alignment:
Q  20 aacatattgagcag-tacacagtacataccatgccacaatcagcacacatgacatgtggcacattattattagttgtaggataacttcaccgaaaaagtc 118  Q
    |||||||| ||||| |||| | |||||||||| | ||||||| ||||||| ||| |||||  |||||||||   ||||||||||||||||| ||||||||    
T  47028228 aacatatttagcaggtacatactacataccattcaacaatcaacacacattacacgtggcgaattattattgaatgtaggataacttcaccaaaaaagtc 47028129  T
Q  119 aattaaagaaattcaccatagaattt 144  Q
    |||| ||  | |||||||||||||||    
T  47028128 aattgaatgacttcaccatagaattt 47028103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 80 - 147
Target Start/End: Original strand, 28683092 - 28683158
Alignment:
Q  80 cattattattagttgtaggataacttcaccgaaaaagtcaattaaagaaattcaccatagaattttcc 147  Q
    |||||||||| | |||||||||||||||||| ||||||||||| ||| | ||||||||||||||||||    
T  28683092 cattattattggatgtaggataacttcaccg-aaaagtcaatttaaggacttcaccatagaattttcc 28683158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 144
Target Start/End: Original strand, 20135440 - 20135512
Alignment:
Q  72 atgtggcacattattattagttgtaggataacttcaccgaaaaagtcaattaaagaaattcaccatagaattt 144  Q
    ||||||| |||||||||| | |||||||||||| | | ||||||||||||| ||  | |||||||||||||||    
T  20135440 atgtggcgcattattattggatgtaggataactgctctgaaaaagtcaatttaatgacttcaccatagaattt 20135512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 85 - 144
Target Start/End: Original strand, 4922544 - 4922603
Alignment:
Q  85 ttattagttgtaggataacttcaccgaaaaagtcaattaaagaaattcaccatagaattt 144  Q
    |||||||||||||||| ||||||||||| |||||| ||  | || |||||||||||||||    
T  4922544 ttattagttgtaggattacttcaccgaagaagtcattttgacaacttcaccatagaattt 4922603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 75 - 143
Target Start/End: Complemental strand, 55917473 - 55917405
Alignment:
Q  75 tggcacattattattagttgtaggataacttcaccgaaaaagtcaattaaagaaattcaccatagaatt 143  Q
    |||| ||||||||||   |||||||||||||| | ||||||||||||| ||  | ||||||||||||||    
T  55917473 tggcgcattattattgaatgtaggataacttctctgaaaaagtcaatttaatgacttcaccatagaatt 55917405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 74; Significance: 8e-34; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 20 - 147
Target Start/End: Original strand, 30089139 - 30089270
Alignment:
Q  20 aacatattgagcag-tacacagtacataccatgccacaatcagcacacatgacatgtggcacattattattagttgt---aggataacttcaccgaaaaa 115  Q
    |||||||||||||| ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| | |||   ||||||||||||| ||||||    
T  30089139 aacatattgagcaggtacacagtacatatcatgcaacaatcagcacacatgacatgtggcacattattattggatgtaggaggataacttcactgaaaaa 30089238  T
Q  116 gtcaattaaagaaattcaccatagaattttcc 147  Q
    ||||||| ||  | ||||||||||||||||||    
T  30089239 gtcaattgaaagacttcaccatagaattttcc 30089270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 20 - 144
Target Start/End: Complemental strand, 13800768 - 13800643
Alignment:
Q  20 aacatattgagcag-tacacagtacataccatgccacaatcagcacacatgacatgtggcacattattattagttgtaggataacttcaccgaaaaagtc 118  Q
    |||||||||||||| |||||| |||||||||||| |||||||||||| ||| |||||| | |||||||||| | |||||  ||||||||| |||||||||    
T  13800768 aacatattgagcaggtacacaatacataccatgcaacaatcagcacaaatgccatgtgacgcattattattggatgtagagtaacttcactgaaaaagtc 13800669  T
Q  119 aattaaagaaattcaccatagaattt 144  Q
    |||| ||  | |||||||||||||||    
T  13800668 aattgaatgacttcaccatagaattt 13800643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 23 - 157
Target Start/End: Complemental strand, 3877694 - 3877559
Alignment:
Q  23 atattgagcag-tacacagtacataccatgccacaatcagcacacatgacatgtggcacattattattagttgtaggataacttcaccgaaaaagtcaat 121  Q
    ||||||||||| |||||| |||||| ||| | ||||||| ||||||||| | |||||||||||||||| | |||||| |||||||||||||||| |||||    
T  3877694 atattgagcaggtacacattacataacattcaacaatcaacacacatgatacgtggcacattattattggatgtagggtaacttcaccgaaaaaatcaat 3877595  T
Q  122 taaagaaattcaccatagaattttccaaattataaa 157  Q
    | ||  | ||||||||||||||| || || ||||||    
T  3877594 tgaacgacttcaccatagaatttccccaaatataaa 3877559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 42 - 139
Target Start/End: Complemental strand, 1786591 - 1786494
Alignment:
Q  42 acataccatgccacaatcagcacacatgacatgtggcacattattattagttgtaggataacttcaccgaaaaagtcaattaaagaaattcaccatag 139  Q
    |||||| |||| ||||||||||||||||||| ||||| |||||||||||| |||| | |||||||||  |||||||||||| || || ||||||||||    
T  1786591 acatactatgcaacaatcagcacacatgacacgtggcgcattattattagatgtatggtaacttcacaaaaaaagtcaattgaacaacttcaccatag 1786494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 74 - 145
Target Start/End: Complemental strand, 30936734 - 30936662
Alignment:
Q  74 gtggcacattattattagttgtaggat-aacttcaccgaaaaagtcaattaaagaaattcaccatagaatttt 145  Q
    |||||||||||||||| | |||||||| || || ||||||||||||||||||| || ||||||||||||||||    
T  30936734 gtggcacattattattggatgtaggattaattttaccgaaaaagtcaattaaataacttcaccatagaatttt 30936662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 72 - 144
Target Start/End: Original strand, 533713 - 533785
Alignment:
Q  72 atgtggcacattattattagttgtaggataacttcaccgaaaaagtcaattaaagaaattcaccatagaattt 144  Q
    ||||||| |||||||||| | |||||||||||||| | ||||||||||||| ||  | |||||||||||||||    
T  533713 atgtggcgcattattattggatgtaggataacttctctgaaaaagtcaatttaatgacttcaccatagaattt 533785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 8e-34; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 20 - 144
Target Start/End: Original strand, 12945429 - 12945554
Alignment:
Q  20 aacatattgagcag-tacacagtacataccatgccacaatcagcacacatgacatgtggcacattattattagttgtaggataacttcaccgaaaaagtc 118  Q
    |||||||||||||| ||||| ||||||||||| |||||||  |||||||||||||||||| |||||||||| | ||||||||||||||| ||||||||||    
T  12945429 aacatattgagcaggtacacggtacataccattccacaatttgcacacatgacatgtggcgcattattattggatgtaggataacttcatcgaaaaagtc 12945528  T
Q  119 aattaaagaaattcaccatagaattt 144  Q
    |||| || || |||||||||||||||    
T  12945529 aattgaacaacttcaccatagaattt 12945554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 20 - 144
Target Start/End: Complemental strand, 33213543 - 33213418
Alignment:
Q  20 aacatattgagcag-tacacagtacataccatgccacaatcagcacacatgacatgtggcacattattattagttgtaggataacttcaccgaaaaagtc 118  Q
    |||||||||||||| |||||| |||||||||||| |||||||||||||||||||| || |||||||||||| | |||| | |||||||| ||||||||||    
T  33213543 aacatattgagcaggtacacaatacataccatgcaacaatcagcacacatgacatatgacacattattattggatgtatggtaacttcatcgaaaaagtc 33213444  T
Q  119 aattaaagaaattcaccatagaattt 144  Q
    |||||||  | || ||||||||||||    
T  33213443 aattaaatgactttaccatagaattt 33213418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 21 - 144
Target Start/End: Original strand, 29835735 - 29835859
Alignment:
Q  21 acatattgagcag-tacacagtacataccatgccacaatcagcacacatgacatgtggcacattattattagttgtaggataacttcaccgaaaaagtca 119  Q
    ||||||||||||| |||||| |||||||||||| |||||||||||||||| |||||| | |||||||||| | |||||| ||||||||| ||||||||||    
T  29835735 acatattgagcaggtacacaatacataccatgcaacaatcagcacacatgccatgtgacgcattattattggatgtagggtaacttcactgaaaaagtca 29835834  T
Q  120 attaaagaaattcaccatagaattt 144  Q
    ||| ||  | |||||||||||||||    
T  29835835 attgaatgacttcaccatagaattt 29835859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 42 - 144
Target Start/End: Complemental strand, 29702494 - 29702392
Alignment:
Q  42 acataccatgccacaatcagcacacatgacatgtggcacattattattagttgtaggataacttcaccgaaaaagtcaattaaagaaattcaccatagaa 141  Q
    |||||| |||| |||||||||||||||||||| |||||||||||||||   | |||| ||||||||||||||||||||||| || || ||||||||||||    
T  29702494 acatactatgcaacaatcagcacacatgacatatggcacattattattgaatttagggtaacttcaccgaaaaagtcaattgaacaacttcaccatagaa 29702395  T
Q  142 ttt 144  Q
    |||    
T  29702394 ttt 29702392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 20 - 148
Target Start/End: Original strand, 55406336 - 55406464
Alignment:
Q  20 aacatattgagcag-tacacagtacataccatgccacaatcagcacacatgacatgtggcacattattattagttgtaggataacttcaccgaaaaagtc 118  Q
    |||||||||||||| ||||||||  ||||| ||| ||||||| ||||||||| | |||||||||||||||| | |||||| |||||||||||||||| ||    
T  55406336 aacatattgagcaggtacacagtggataccgtgcaacaatcaacacacatgatacgtggcacattattattggatgtagggtaacttcaccgaaaaa-tc 55406434  T
Q  119 aattaaagaaattcaccatagaattttcca 148  Q
    |||| || || || ||||| ||||||||||    
T  55406435 aattgaacaactttaccatcgaattttcca 55406464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 20 - 144
Target Start/End: Original strand, 20108021 - 20108146
Alignment:
Q  20 aacatattgagcag-tacacagtacataccatgccacaatcagcacacatgacatgtggcacattattattagttgtaggataacttcaccgaaaaagtc 118  Q
    |||||||||||||| | ||||  |||||  |||| ||||| | |||||||||||| |||| |||||||||| | |||| |||||||||||| ||||||||    
T  20108021 aacatattgagcagatgcacaacacatattatgcaacaataaacacacatgacatatggcgcattattattggatgtaagataacttcaccaaaaaagtc 20108120  T
Q  119 aattaaagaaattcaccatagaattt 144  Q
    |||| || || |||||||||||||||    
T  20108121 aattgaataacttcaccatagaattt 20108146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 42 - 97
Target Start/End: Original strand, 53284241 - 53284296
Alignment:
Q  42 acataccatgccacaatcagcacacatgacatgtggcacattattattagttgtag 97  Q
    |||||| |||| ||||||||||||||||||||||||| |||||||||||| |||||    
T  53284241 acatactatgcaacaatcagcacacatgacatgtggcgcattattattagatgtag 53284296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 42 - 144
Target Start/End: Original strand, 5234704 - 5234806
Alignment:
Q  42 acataccatgccacaatcagcacacatgacatgtggcacattattattagttgtaggataacttcaccgaaaaagtcaattaaagaaattcaccatagaa 141  Q
    |||||| |||| ||||| | |||||||||||  |||| ||||||||||   ||||||||||||||| | |||||||||||| || || ||||||||| ||    
T  5234704 acatactatgcaacaataaacacacatgacacatggcgcattattattgaatgtaggataacttcatcaaaaaagtcaattgaataacttcaccataaaa 5234803  T
Q  142 ttt 144  Q
    |||    
T  5234804 ttt 5234806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 72 - 149
Target Start/End: Complemental strand, 39831276 - 39831199
Alignment:
Q  72 atgtggcacattattattagttgtaggataacttcaccgaaaaagtcaattaaagaaattcaccatagaattttccaa 149  Q
    ||||||| |||||||||| | |||||||||||| | | ||||||||||||| ||  | ||||||||||||||| ||||    
T  39831276 atgtggcgcattattattggatgtaggataactgctctgaaaaagtcaatttaatgacttcaccatagaatttcccaa 39831199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 150
Target Start/End: Complemental strand, 31654689 - 31654613
Alignment:
Q  75 tggcacattattattagtt-gtaggataacttcaccgaaaaagtcaattaaagaaattcaccatagaattttccaaa 150  Q
    ||||||||||||||| | | |||||||||||||||||||||||| |||| ||  | |||||| |||||||| |||||    
T  31654689 tggcacattattattggatcgtaggataacttcaccgaaaaagttaattgaatgacttcaccgtagaatttcccaaa 31654613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 85 - 149
Target Start/End: Complemental strand, 50359544 - 50359480
Alignment:
Q  85 ttattagttgtaggataacttcaccgaaaaagtcaattaaagaaattcaccatagaattttccaa 149  Q
    ||||||| |||||||| ||||||||||| |||||| ||  | || ||||||||||||||| ||||    
T  50359544 ttattagctgtaggattacttcaccgaagaagtcattttgacaacttcaccatagaatttcccaa 50359480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 1e-29; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 18 - 151
Target Start/End: Original strand, 6444115 - 6444249
Alignment:
Q  18 gaaacatattgagcag-tacacagtacataccatgccacaatcagcacacatgacatgtggcacattattattagttgtaggataacttcaccgaaaaag 116  Q
    |||||||||| ||||| |||| | |||||||||| | ||||||| ||||||||||||||||| ||||||||||   ||||||||||||||||||||||||    
T  6444115 gaaacatatttagcaggtacatactacataccattcaacaatcaacacacatgacatgtggcgcattattattgaatgtaggataacttcaccgaaaaag 6444214  T
Q  117 tcaattaaagaaattcaccatagaattttccaaat 151  Q
    |||||| ||  | ||||||||||||||| ||||||    
T  6444215 tcaattgaatgacttcaccatagaatttcccaaat 6444249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 54 - 144
Target Start/End: Original strand, 34095842 - 34095932
Alignment:
Q  54 acaatcagcacacatgacatgtggcacattattattagttgtaggataacttcaccgaaaaagtcaattaaagaaattcaccatagaattt 144  Q
    ||||||| ||||||||||| ||||| ||||||||||   ||||||||||||||||| |||||||||||| ||  | |||||||||||||||    
T  34095842 acaatcaacacacatgacacgtggcgcattattattgaatgtaggataacttcaccaaaaaagtcaattgaatgacttcaccatagaattt 34095932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 42 - 144
Target Start/End: Original strand, 47329643 - 47329745
Alignment:
Q  42 acataccatgccacaatcagcacacatgacatgtggcacattattattagttgtaggataacttcaccgaaaaagtcaattaaagaaattcaccatagaa 141  Q
    |||||| |||| ||||| | |||||||||||  |||| |||||||||| | ||||||||||||||| | |||||||||||| || || ||||||||| ||    
T  47329643 acatactatgcaacaataaacacacatgacacatggcgcattattattggatgtaggataacttcatcaaaaaagtcaattgaataacttcaccataaaa 47329742  T
Q  142 ttt 144  Q
    |||    
T  47329743 ttt 47329745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 72 - 153
Target Start/End: Original strand, 45974452 - 45974533
Alignment:
Q  72 atgtggcacattattattagttgtaggataacttcaccgaaaaagtcaattaaagaaattcaccatagaattttccaaatta 153  Q
    ||||||| |||||||||| | |||||||||||||| | ||||||||||||| ||  | ||||||||||||||| ||||||||    
T  45974452 atgtggcgcattattattggatgtaggataacttctctgaaaaagtcaatttaatgacttcaccatagaatttcccaaatta 45974533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 72 - 144
Target Start/End: Original strand, 29245281 - 29245353
Alignment:
Q  72 atgtggcacattattattagttgtaggataacttcaccgaaaaagtcaattaaagaaattcaccatagaattt 144  Q
    ||||||| |||||||||| | |||||||||||||| | ||||||||||||| || || |||||||||||||||    
T  29245281 atgtggcgcattattattggatgtaggataacttctctgaaaaagtcaatttaataacttcaccatagaattt 29245353  T

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Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 74 - 147
Target Start/End: Original strand, 29263416 - 29263490
Alignment:
Q  74 gtggcacattattattagttgtaggat-aacttcaccgaaaaagtcaattaaagaaattcaccatagaattttcc 147  Q
    |||||||||||||||| | |||||||| || || ||||||||| ||||||||| || ||||||||||||||||||    
T  29263416 gtggcacattattattggatgtaggattaattttaccgaaaaaatcaattaaataacttcaccatagaattttcc 29263490  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 107 - 147
Target Start/End: Original strand, 8419403 - 8419443
Alignment:
Q  107 accgaaaaagtcaattaaagaaattcaccatagaattttcc 147  Q
    |||||||||||||||| ||||| ||||||||| ||||||||    
T  8419403 accgaaaaagtcaattgaagaacttcaccataaaattttcc 8419443  T

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Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 54 - 147
Target Start/End: Complemental strand, 30778385 - 30778292
Alignment:
Q  54 acaatcagcacacatgacatgtggcacattattattagttgtaggataacttcaccgaaaaagtcaattaaagaaattcaccatagaattttcc 147  Q
    ||||||||||||||||||||||||||||||||||||   |||||  |||||||| |||||||||||||||||||| |||||| |||||||||||    
T  30778385 acaatcagcacacatgacatgtggcacattattattgaatgtagagtaacttcatcgaaaaagtcaattaaagaacttcaccgtagaattttcc 30778292  T

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Target: chr2; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 23 - 144
Target Start/End: Complemental strand, 33751631 - 33751509
Alignment:
Q  23 atattgagcag-tacacagtacataccatgccacaatcagcacacatgacatgtggcacattattattagttgtaggataacttcaccgaaaaagtcaat 121  Q
    ||||||||||| |||||| |||||| ||| | ||||||| ||||| ||| |||||||||||||||||| | |||||| ||||||||||||||||||||||    
T  33751631 atattgagcaggtacacattacataacattcaacaatcaacacacgtgatatgtggcacattattattggatgtagggtaacttcaccgaaaaagtcaat 33751532  T
Q  122 taaagaaattcaccatagaattt 144  Q
    | ||  | |||||||||||||||    
T  33751531 tgaacgacttcaccatagaattt 33751509  T

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Target: chr2; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 23 - 149
Target Start/End: Original strand, 7091068 - 7091195
Alignment:
Q  23 atattgagcag-tacacagtacataccatgccacaatcagcacacatgacatgtggcacattattattagttgtaggataacttcaccgaaaaagtcaat 121  Q
    ||||||||||| |||||| |||||| ||| | ||||||| ||||| ||| | |||||||||||||||| | |||||| ||||||||||||||||||||||    
T  7091068 atattgagcaggtacacattacataacattcaacaatcaacacacgtgatacgtggcacattattattggatgtagggtaacttcaccgaaaaagtcaat 7091167  T
Q  122 taaagaaattcaccatagaattttccaa 149  Q
    | ||  | ||||||||||||||| ||||    
T  7091168 tgaacgacttcaccatagaatttcccaa 7091195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 42 - 149
Target Start/End: Original strand, 37080704 - 37080811
Alignment:
Q  42 acataccatgccacaatcagcacacatgacatgtggcacattattattagttgtaggataacttcaccgaaaaagtcaattaaagaaattcaccatagaa 141  Q
    |||||| |||| ||||| | |||||||||||  |||| |||||||||| | ||||||||||||||| | |||||||||||| || || ||||||||||||    
T  37080704 acatactatgcaacaataaacacacatgacacatggcgcattattattggatgtaggataacttcatcaaaaaagtcaattgaataacttcaccatagaa 37080803  T
Q  142 ttttccaa 149  Q
    ||| ||||    
T  37080804 tttcccaa 37080811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 72 - 148
Target Start/End: Original strand, 17692623 - 17692699
Alignment:
Q  72 atgtggcacattattattagttgtaggataacttcaccgaaaaagtcaattaaagaaattcaccatagaattttcca 148  Q
    ||||||| |||||||||| | |||||||||||||| | ||||||||||||| ||  | |||||||||||||||||||    
T  17692623 atgtggcgcattattattggatgtaggataacttctctgaaaaagtcaatttaatgacttcaccatagaattttcca 17692699  T

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Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 72 - 144
Target Start/End: Original strand, 16431880 - 16431952
Alignment:
Q  72 atgtggcacattattattagttgtaggataacttcaccgaaaaagtcaattaaagaaattcaccatagaattt 144  Q
    ||||||| |||||||||| | |||||||||||||| | ||||||||||||| ||  | |||||||||||||||    
T  16431880 atgtggcgcattattattggatgtaggataacttctctgaaaaagtcaatttaatgacttcaccatagaattt 16431952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 72 - 144
Target Start/End: Complemental strand, 37259746 - 37259674
Alignment:
Q  72 atgtggcacattattattagttgtaggataacttcaccgaaaaagtcaattaaagaaattcaccatagaattt 144  Q
    ||||||| |||||||||| | |||||||||||||| | ||||||||||||| ||  | |||||||||||||||    
T  37259746 atgtggcgcattattattggatgtaggataacttctctgaaaaagtcaatttaatgacttcaccatagaattt 37259674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 144
Target Start/End: Complemental strand, 14805649 - 14805577
Alignment:
Q  72 atgtggcacattattattagttgtaggataacttcaccgaaaaagtcaattaaagaaattcaccatagaattt 144  Q
    ||||||| |||||||||| | |||||||||||||| | |||||| |||||| ||  | |||||||||||||||    
T  14805649 atgtggcgcattattattggatgtaggataacttctctgaaaaattcaatttaatgacttcaccatagaattt 14805577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 85 - 144
Target Start/End: Original strand, 14102006 - 14102065
Alignment:
Q  85 ttattagttgtaggataacttcaccgaaaaagtcaattaaagaaattcaccatagaattt 144  Q
    |||||||||||||||| ||||||||||| |||||| ||  | || |||||||||||||||    
T  14102006 ttattagttgtaggattacttcaccgaagaagtcattttgacaacttcaccatagaattt 14102065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 72 - 122
Target Start/End: Original strand, 15332762 - 15332812
Alignment:
Q  72 atgtggcacattattattagttgtaggataacttcaccgaaaaagtcaatt 122  Q
    ||||||| |||||||||| | |||||||||||||| | |||||||||||||    
T  15332762 atgtggcgcattattattggatgtaggataacttctctgaaaaagtcaatt 15332812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0896 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: scaffold0896
Description:

Target: scaffold0896; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 20 - 144
Target Start/End: Original strand, 1902 - 2027
Alignment:
Q  20 aacatattgagcag-tacacagtacataccatgccacaatcagcacacatgacatgtggcacattattattagttgtaggataacttcaccgaaaaagtc 118  Q
    |||||||| ||||| |||| | |||||||||| | ||||||| ||||||||||||||||| ||||||||||   |||||||||||||||| |||||||||    
T  1902 aacatatttagcaggtacatactacataccattcaacaatcaacacacatgacatgtggcgcattattattgaatgtaggataacttcactgaaaaagtc 2001  T
Q  119 aattaaagaaattcaccatagaattt 144  Q
    |||| ||  | |||||| ||||||||    
T  2002 aattgaatgacttcaccgtagaattt 2027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0662 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0662
Description:

Target: scaffold0662; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 20 - 144
Target Start/End: Complemental strand, 7107 - 6982
Alignment:
Q  20 aacatattgagcag-tacacagtacataccatgccacaatcagcacacatgacatgtggcacattattattagttgtaggataacttcaccgaaaaagtc 118  Q
    |||||||| ||||| |||| | |||||||||| | ||||||| ||||||| ||| |||||  |||||||||   ||||||||||||||||| ||||||||    
T  7107 aacatatttagcaggtacatactacataccattcaacaatcaacacacattacacgtggcgaattattattgaatgtaggataacttcaccaaaaaagtc 7008  T
Q  119 aattaaagaaattcaccatagaattt 144  Q
    |||| ||  | |||||||||||||||    
T  7007 aattgaatgacttcaccatagaattt 6982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 72 - 150
Target Start/End: Complemental strand, 25167 - 25089
Alignment:
Q  72 atgtggcacattattattagttgtaggataacttcaccgaaaaagtcaattaaagaaattcaccatagaattttccaaa 150  Q
    ||||||| |||||||||| | |||||||||||||| | ||||||||||||| ||  | ||||||||||||||| |||||    
T  25167 atgtggcgcattattattggatgtaggataacttctctgaaaaagtcaatttaatgacttcaccatagaatttcccaaa 25089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0685 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0685
Description:

Target: scaffold0685; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 85 - 150
Target Start/End: Complemental strand, 6693 - 6628
Alignment:
Q  85 ttattagttgtaggataacttcaccgaaaaagtcaattaaagaaattcaccatagaattttccaaa 150  Q
    ||||||| |||||||| ||||||||||| |||||| || || || ||||||||||||||| |||||    
T  6693 ttattagctgtaggattacttcaccgaagaagtcattttaacaacttcaccatagaatttcccaaa 6628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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