View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3024_low_9 (Length: 343)
Name: NF3024_low_9
Description: NF3024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3024_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 281; Significance: 1e-157; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 5 - 329
Target Start/End: Original strand, 1043275 - 1043599
Alignment:
| Q |
5 |
ggtagattattctgtcagatttggcatgttggaagagtttcaaattcaggtatatcatgtttatttcatcatatcattatttattatgaaaataaaagtt |
104 |
Q |
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| T |
1043275 |
ggtatatttttctgtcagatttggcatgttggaagagtttcaaattcaggtatatcatgtttatttcatcatatcattatttattatgaaaataaaagtt |
1043374 |
T |
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| Q |
105 |
ggagtgagcggaaggtctaactatcagtgtcaacctcaattggctaagatcatcaatttttaacatagacctagcataattttagcattacctagctcaa |
204 |
Q |
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| T |
1043375 |
ggagtgagctgaaggtctaaccatcaatgtcaacccaaattggttaagatcatcaatttttaacatagacctagcataattttagcattacctagctcaa |
1043474 |
T |
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| Q |
205 |
atataacatgatttttaagcatcaatcaaataactaaggtctaccatcattgccagtaaaccgaagatgatttgggtttgaggttgttattattaagaat |
304 |
Q |
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| T |
1043475 |
atataacatgatttttaagcatcaatcaaataacttaggtctaccatcattgacagtaaaccgaagatgatttgggtttgaggttgttattattgagaat |
1043574 |
T |
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| Q |
305 |
tactatcaaggtgtaaccactttct |
329 |
Q |
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| T |
1043575 |
tactatcaaggtgtaaccactttct |
1043599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 5 - 214
Target Start/End: Original strand, 1049369 - 1049569
Alignment:
| Q |
5 |
ggtagattattctgtcagatttggcatgttggaagagtttcaaattcaggtatatcatgtttatttcatcatatcattatttattatgaaaataaaagtt |
104 |
Q |
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| T |
1049369 |
ggtatatttttctgtcaaatttggcatgctggaagggtttcaaattcaggtatgta---tctatttcgtcatatcattatttattatgtaaataaatgt- |
1049464 |
T |
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| Q |
105 |
ggagtgagcggaaggtctaactatcagtgtcaacctcaattggctaagatcatcaatttttaacatagacctagcataattttagcattacctagctcaa |
204 |
Q |
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| T |
1049465 |
-----gaccggaaggtctaaccatctgtgtcaacctcaattggctaagatcatcaatttttaacatagacctagcataattttagcattacctagctcaa |
1049559 |
T |
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| Q |
205 |
atataacatg |
214 |
Q |
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|||||||||| |
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| T |
1049560 |
atataacatg |
1049569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 5 - 53
Target Start/End: Original strand, 1049579 - 1049627
Alignment:
| Q |
5 |
ggtagattattctgtcagatttggcatgttggaagagtttcaaattcag |
53 |
Q |
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|||| ||| |||||||| ||||||||||||||||||||||||||||||| |
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| T |
1049579 |
ggtatatttttctgtcaaatttggcatgttggaagagtttcaaattcag |
1049627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 14 - 51
Target Start/End: Original strand, 1032876 - 1032913
Alignment:
| Q |
14 |
ttctgtcagatttggcatgttggaagagtttcaaattc |
51 |
Q |
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| T |
1032876 |
ttctgtcagatttggcatgttggaagagtttctaattc |
1032913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 14 - 51
Target Start/End: Original strand, 1052199 - 1052236
Alignment:
| Q |
14 |
ttctgtcagatttggcatgttggaagagtttcaaattc |
51 |
Q |
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| T |
1052199 |
ttctgtcagatttggcatgttggaagagtttctaattc |
1052236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 1065046 - 1065086
Alignment:
| Q |
17 |
tgtcagatttggcatgttggaagagtttcaaattcaggtat |
57 |
Q |
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| T |
1065046 |
tgtcagatttggcatgttggaagagtttctgattcaggtat |
1065086 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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