View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3025_high_12 (Length: 369)
Name: NF3025_high_12
Description: NF3025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3025_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 41 - 237
Target Start/End: Original strand, 32510785 - 32510981
Alignment:
| Q |
41 |
tcttcttcatcggctagaagtgaaaattattttagaatatttcaagtttcttgtgagttaatcagaagttagaaccatgcttatcttaagaccatgtatt |
140 |
Q |
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| T |
32510785 |
tcttctccatcggctagaagtgaaaattattttagaatattccaagtttcttgtgagttaatcagaagttagaaccatgcttatcttaagaccatgtatt |
32510884 |
T |
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| Q |
141 |
ctcacttaatgcataccataggttttggagcaaaacctattcatgtgaacaaaaagtgatttggccgagtgattcttggaattgtgatcacagtgct |
237 |
Q |
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| T |
32510885 |
ctcacttaatgcataccataggttttggagcaaaacctattcatgtgaacaaaaagtgatttggccgagtgattcttggaattgtgatcacagtgct |
32510981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 53 - 175
Target Start/End: Original strand, 32513744 - 32513880
Alignment:
| Q |
53 |
gctagaagtgaaaattattttagaatatttcaagtttcttgtgagttaatcagaagttagaaccatgct---------------tatcttaagaccatgt |
137 |
Q |
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| T |
32513744 |
gctagaagtgaaaattattttagaatatttcaagtttcttgtgagttaa-cagaagtaagaaccgtgcttatctgctatatagatatcttaagaccctgt |
32513842 |
T |
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| Q |
138 |
attctcacttaatgcataccataggttttggagcaaaa |
175 |
Q |
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| T |
32513843 |
attctcacttaatgcataccataggttctggagcaaaa |
32513880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 300 - 357
Target Start/End: Original strand, 32511044 - 32511101
Alignment:
| Q |
300 |
attagtgaattcaataatctaagaccactccctccctactgtatcttaattgcttcat |
357 |
Q |
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| T |
32511044 |
attagtgaattcaataatctgagaccactccctccctactgtatcttaactgcttcat |
32511101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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