View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3025_high_27 (Length: 230)

Name: NF3025_high_27
Description: NF3025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3025_high_27
NF3025_high_27
[»] chr8 (21 HSPs)
chr8 (53-210)||(26125861-26126029)
chr8 (9-77)||(26125787-26125855)
chr8 (53-102)||(3097162-3097211)
chr8 (53-102)||(3467637-3467686)
chr8 (53-102)||(44926959-44927008)
chr8 (53-101)||(25697917-25697965)
chr8 (53-101)||(30085596-30085644)
chr8 (56-103)||(22936748-22936795)
chr8 (53-99)||(26243228-26243274)
chr8 (53-103)||(38114548-38114598)
chr8 (53-101)||(36121502-36121550)
chr8 (53-100)||(36113999-36114046)
chr8 (54-103)||(28425427-28425476)
chr8 (53-101)||(35615813-35615861)
chr8 (53-93)||(40742260-40742300)
chr8 (53-103)||(15206800-15206850)
chr8 (53-99)||(24897547-24897593)
chr8 (53-103)||(29023327-29023377)
chr8 (53-103)||(33626989-33627039)
chr8 (53-99)||(42143323-42143369)
chr8 (57-103)||(45147220-45147266)
[»] chr6 (10 HSPs)
chr6 (53-103)||(33898960-33899010)
chr6 (53-102)||(13739301-13739350)
chr6 (53-102)||(13744801-13744850)
chr6 (54-102)||(6208019-6208067)
chr6 (53-99)||(17829957-17830003)
chr6 (53-101)||(29399750-29399798)
chr6 (64-103)||(16548216-16548255)
chr6 (57-102)||(1312395-1312440)
chr6 (54-99)||(16442324-16442369)
chr6 (53-101)||(10826187-10826235)
[»] chr3 (24 HSPs)
chr3 (53-101)||(10853224-10853272)
chr3 (53-101)||(26519760-26519808)
chr3 (53-103)||(3348339-3348389)
chr3 (53-103)||(50664854-50664904)
chr3 (54-103)||(44939371-44939420)
chr3 (53-95)||(35930834-35930876)
chr3 (54-103)||(4984678-4984727)
chr3 (57-102)||(20813245-20813290)
chr3 (53-98)||(35930884-35930929)
chr3 (53-102)||(55154597-55154646)
chr3 (54-102)||(38125398-38125446)
chr3 (57-101)||(38340905-38340949)
chr3 (53-101)||(42318425-42318473)
chr3 (53-103)||(10334234-10334284)
chr3 (53-103)||(23496413-23496463)
chr3 (53-102)||(31618368-31618417)
chr3 (53-102)||(38172263-38172312)
chr3 (53-102)||(48189398-48189447)
chr3 (58-102)||(15511332-15511376)
chr3 (54-105)||(52966762-52966813)
chr3 (53-99)||(8424689-8424735)
chr3 (48-101)||(30809917-30809970)
chr3 (54-103)||(30811487-30811536)
chr3 (54-99)||(31084289-31084334)
[»] chr2 (20 HSPs)
chr2 (53-103)||(2215357-2215407)
chr2 (53-101)||(2213611-2213659)
chr2 (56-101)||(28127242-28127287)
chr2 (53-102)||(36548304-36548353)
chr2 (53-103)||(9988454-9988504)
chr2 (53-102)||(1944993-1945042)
chr2 (53-101)||(7472629-7472677)
chr2 (53-100)||(32502090-32502137)
chr2 (56-103)||(36312384-36312431)
chr2 (56-102)||(5916196-5916242)
chr2 (62-104)||(43436263-43436305)
chr2 (53-102)||(8170417-8170466)
chr2 (53-102)||(44619015-44619064)
chr2 (53-100)||(30007509-30007556)
chr2 (53-104)||(31562639-31562690)
chr2 (53-99)||(34433263-34433309)
chr2 (53-98)||(14821267-14821312)
chr2 (53-101)||(2213752-2213800)
chr2 (53-101)||(25747837-25747885)
chr2 (53-101)||(39141425-39141473)
[»] chr5 (20 HSPs)
chr5 (53-102)||(35760299-35760348)
chr5 (53-103)||(8049003-8049053)
chr5 (53-103)||(32030824-32030874)
chr5 (54-103)||(24045941-24045990)
chr5 (53-102)||(39987920-39987969)
chr5 (53-101)||(3667964-3668012)
chr5 (56-103)||(7385884-7385931)
chr5 (53-103)||(40885321-40885371)
chr5 (57-102)||(5710339-5710384)
chr5 (56-101)||(41835005-41835050)
chr5 (54-102)||(22482300-22482348)
chr5 (53-103)||(32454646-32454697)
chr5 (53-103)||(10058184-10058234)
chr5 (53-103)||(40495310-40495360)
chr5 (53-103)||(40791022-40791072)
chr5 (53-102)||(42146417-42146466)
chr5 (53-101)||(33953856-33953904)
chr5 (53-100)||(13253038-13253085)
chr5 (53-98)||(7715050-7715095)
chr5 (53-105)||(27021238-27021290)
[»] chr4 (32 HSPs)
chr4 (53-101)||(14072583-14072631)
chr4 (53-103)||(9889290-9889340)
chr4 (53-103)||(28987099-28987149)
chr4 (53-103)||(29149262-29149312)
chr4 (53-102)||(32238015-32238064)
chr4 (53-102)||(46830025-46830074)
chr4 (54-98)||(9893793-9893837)
chr4 (54-102)||(48550299-48550347)
chr4 (53-100)||(43781477-43781524)
chr4 (53-103)||(39187815-39187865)
chr4 (53-103)||(54150607-54150657)
chr4 (53-102)||(19592187-19592236)
chr4 (53-101)||(6138577-6138625)
chr4 (53-101)||(26426072-26426120)
chr4 (53-100)||(39636866-39636913)
chr4 (53-99)||(30842212-30842258)
chr4 (53-102)||(15603441-15603490)
chr4 (57-102)||(26459852-26459897)
chr4 (56-101)||(26651805-26651850)
chr4 (54-103)||(48550397-48550446)
chr4 (54-102)||(15619681-15619729)
chr4 (57-101)||(31520328-31520372)
chr4 (53-105)||(41866235-41866287)
chr4 (53-103)||(14076095-14076145)
chr4 (53-103)||(14564101-14564151)
chr4 (53-103)||(16566386-16566436)
chr4 (53-102)||(49519811-49519863)
chr4 (53-103)||(51923021-51923071)
chr4 (53-103)||(53532058-53532108)
chr4 (53-103)||(54735606-54735656)
chr4 (53-98)||(54153125-54153170)
chr4 (53-101)||(25312796-25312844)
[»] chr1 (28 HSPs)
chr1 (54-102)||(6166230-6166278)
chr1 (53-102)||(1199947-1199996)
chr1 (54-103)||(26058362-26058411)
chr1 (53-102)||(42850176-42850225)
chr1 (53-102)||(43728835-43728884)
chr1 (53-102)||(50406250-50406299)
chr1 (53-100)||(11023289-11023336)
chr1 (53-103)||(10470709-10470759)
chr1 (53-103)||(12247539-12247589)
chr1 (54-103)||(27801608-27801657)
chr1 (54-103)||(35569158-35569207)
chr1 (57-102)||(50977297-50977342)
chr1 (54-102)||(20800234-20800282)
chr1 (53-96)||(45710168-45710211)
chr1 (53-112)||(47123506-47123565)
chr1 (57-103)||(13056121-13056167)
chr1 (53-103)||(13931742-13931791)
chr1 (53-102)||(31223494-31223543)
chr1 (53-102)||(48511028-48511077)
chr1 (54-102)||(7826311-7826359)
chr1 (53-100)||(25230126-25230173)
chr1 (53-103)||(35536191-35536241)
chr1 (54-99)||(6061263-6061308)
chr1 (53-106)||(12468332-12468384)
chr1 (54-103)||(40352511-40352560)
chr1 (62-102)||(291704-291744)
chr1 (53-101)||(6464727-6464775)
chr1 (54-102)||(7765241-7765289)
[»] scaffold0381 (1 HSPs)
scaffold0381 (53-103)||(9206-9256)
[»] chr7 (19 HSPs)
chr7 (54-101)||(41715775-41715822)
chr7 (53-103)||(3622402-3622452)
chr7 (53-103)||(10371900-10371950)
chr7 (53-103)||(37562687-37562737)
chr7 (53-103)||(37639547-37639597)
chr7 (53-102)||(48459827-48459876)
chr7 (53-101)||(19097514-19097562)
chr7 (56-103)||(39977672-39977719)
chr7 (53-99)||(43631642-43631688)
chr7 (53-102)||(34010456-34010504)
chr7 (61-106)||(34365921-34365966)
chr7 (54-99)||(39391083-39391128)
chr7 (53-101)||(3342907-3342955)
chr7 (56-102)||(32187060-32187106)
chr7 (54-100)||(38230186-38230232)
chr7 (53-106)||(3375607-3375660)
chr7 (56-97)||(12632031-12632072)
chr7 (53-98)||(46541717-46541762)
chr7 (56-100)||(9456224-9456268)
[»] scaffold0369 (1 HSPs)
scaffold0369 (53-102)||(8545-8594)
[»] scaffold0394 (1 HSPs)
scaffold0394 (53-103)||(5785-5835)
[»] scaffold0005 (1 HSPs)
scaffold0005 (53-103)||(253224-253274)
[»] scaffold0983 (1 HSPs)
scaffold0983 (53-101)||(2225-2273)


Alignment Details
Target: chr8 (Bit Score: 106; Significance: 3e-53; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 53 - 210
Target Start/End: Original strand, 26125861 - 26126029
Alignment:
Q  53 ctcaattctatcaaaatcaattctcaccaccgctataccaaacacacactacatcaaatttattctttacaatgaaaactaaaaa--taactaaccagaa 150  Q
    ||||||||||||||||| |||||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||   ||||||||||||    
T  26125861 ctcaattctatcaaaattaattctcaccaccgctgtaccaaagacacactgcatcaaatttattctttacaatgaaaactaaaaaataaactaaccagaa 26125960  T
Q  151 tttgcaaatcc---------atgtcgcaactagattcacagagaatgagtatgaaattcatgataacta 210  Q
    |||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||    
T  26125961 tttgcaaatccatgtcccaaatgtcgcaactagattcacagagaatgagtatgaaattcatgataacta 26126029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 9 - 77
Target Start/End: Original strand, 26125787 - 26125855
Alignment:
Q  9 gggtgtattgccacacgtggtggtatatatatcacctctccaatctcaattctatcaaaatcaattctc 77  Q
    ||||||||||||||| | ||||||| |||||||||| || ||| |||||||||||||||||||||||||    
T  26125787 gggtgtattgccacatggggtggtacatatatcaccacttcaaactcaattctatcaaaatcaattctc 26125855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 53 - 102
Target Start/End: Complemental strand, 3097211 - 3097162
Alignment:
Q  53 ctcaattctatcaaaatcaattctcaccaccgctataccaaacacacact 102  Q
    ||||||||||||||||| |||||||||||| |||||||||||||||||||    
T  3097211 ctcaattctatcaaaattaattctcaccactgctataccaaacacacact 3097162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 53 - 102
Target Start/End: Original strand, 3467637 - 3467686
Alignment:
Q  53 ctcaattctatcaaaatcaattctcaccaccgctataccaaacacacact 102  Q
    ||||||||||||||||||||||||| ||||||| ||||||||||||||||    
T  3467637 ctcaattctatcaaaatcaattctcgccaccgccataccaaacacacact 3467686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 53 - 102
Target Start/End: Original strand, 44926959 - 44927008
Alignment:
Q  53 ctcaattctatcaaaatcaattctcaccaccgctataccaaacacacact 102  Q
    ||||||||||||||||||||||||| ||||||| ||||||||||||||||    
T  44926959 ctcaattctatcaaaatcaattctcgccaccgccataccaaacacacact 44927008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 53 - 101
Target Start/End: Complemental strand, 25697965 - 25697917
Alignment:
Q  53 ctcaattctatcaaaatcaattctcaccaccgctataccaaacacacac 101  Q
    ||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  25697965 ctcaattctatcaaaatcaattctctccaccgctataccaagcacacac 25697917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 53 - 101
Target Start/End: Complemental strand, 30085644 - 30085596
Alignment:
Q  53 ctcaattctatcaaaatcaattctcaccaccgctataccaaacacacac 101  Q
    ||||||| |||||||||||||||||||| ||||||||||||||||||||    
T  30085644 ctcaattatatcaaaatcaattctcaccgccgctataccaaacacacac 30085596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 56 - 103
Target Start/End: Complemental strand, 22936795 - 22936748
Alignment:
Q  56 aattctatcaaaatcaattctcaccaccgctataccaaacacacacta 103  Q
    |||||||||||||||||||||| ||||||| |||||||||||||||||    
T  22936795 aattctatcaaaatcaattctcgccaccgccataccaaacacacacta 22936748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 53 - 99
Target Start/End: Original strand, 26243228 - 26243274
Alignment:
Q  53 ctcaattctatcaaaatcaattctcaccaccgctataccaaacacac 99  Q
    |||||||||||||||||||||||||||  ||||||||||||||||||    
T  26243228 ctcaattctatcaaaatcaattctcactgccgctataccaaacacac 26243274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 53 - 103
Target Start/End: Original strand, 38114548 - 38114598
Alignment:
Q  53 ctcaattctatcaaaatcaattctcaccaccgctataccaaacacacacta 103  Q
    ||||||||||||||||| ||||||||||||||| | |||||||||||||||    
T  38114548 ctcaattctatcaaaataaattctcaccaccgccaaaccaaacacacacta 38114598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 53 - 101
Target Start/End: Complemental strand, 36121550 - 36121502
Alignment:
Q  53 ctcaattctatcaaaatcaattctcaccaccgctataccaaacacacac 101  Q
    |||||||||||||||||||||||||  ||||||| ||||||||||||||    
T  36121550 ctcaattctatcaaaatcaattctcgacaccgctgtaccaaacacacac 36121502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 53 - 100
Target Start/End: Complemental strand, 36114046 - 36113999
Alignment:
Q  53 ctcaattctatcaaaatcaattctcaccaccgctataccaaacacaca 100  Q
    |||||||||||||||||||||||||||| |||  ||||||||||||||    
T  36114046 ctcaattctatcaaaatcaattctcaccgccgtcataccaaacacaca 36113999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 54 - 103
Target Start/End: Complemental strand, 28425476 - 28425427
Alignment:
Q  54 tcaattctatcaaaatcaattctcaccaccgctataccaaacacacacta 103  Q
    ||||||||||||||||||||| || ||||||  |||||||||||||||||    
T  28425476 tcaattctatcaaaatcaattttcgccaccgtcataccaaacacacacta 28425427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 101
Target Start/End: Original strand, 35615813 - 35615861
Alignment:
Q  53 ctcaattctatcaaaatcaattctcaccaccgctataccaaacacacac 101  Q
    ||||||||||||||||||||||||| ||||||||  |||||||| ||||    
T  35615813 ctcaattctatcaaaatcaattctctccaccgctgaaccaaacagacac 35615861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 93
Target Start/End: Complemental strand, 40742300 - 40742260
Alignment:
Q  53 ctcaattctatcaaaatcaattctcaccaccgctataccaa 93  Q
    ||||||||||||||||||||||||||||  |||||||||||    
T  40742300 ctcaattctatcaaaatcaattctcaccgtcgctataccaa 40742260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 103
Target Start/End: Original strand, 15206800 - 15206850
Alignment:
Q  53 ctcaattctatcaaaatcaattctcaccaccgctataccaaacacacacta 103  Q
    ||||||||||||||||| ||||||| ||||| ||  |||||||||||||||    
T  15206800 ctcaattctatcaaaattaattctctccaccactgaaccaaacacacacta 15206850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 99
Target Start/End: Complemental strand, 24897593 - 24897547
Alignment:
Q  53 ctcaattctatcaaaatcaattctcaccaccgctataccaaacacac 99  Q
    ||||||| |||||||||||||||| ||| |||| |||||||||||||    
T  24897593 ctcaattttatcaaaatcaattcttaccgccgccataccaaacacac 24897547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 103
Target Start/End: Original strand, 29023327 - 29023377
Alignment:
Q  53 ctcaattctatcaaaatcaattctcaccaccgctataccaaacacacacta 103  Q
    |||||||||||||||||||||| || ||||| | ||||| |||||||||||    
T  29023327 ctcaattctatcaaaatcaattttcgccaccaccataccgaacacacacta 29023377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 103
Target Start/End: Complemental strand, 33627039 - 33626989
Alignment:
Q  53 ctcaattctatcaaaatcaattctcaccaccgctataccaaacacacacta 103  Q
    ||||||||||||||||||||||| | |||||||   |||||||||||||||    
T  33627039 ctcaattctatcaaaatcaattccctccaccgccgaaccaaacacacacta 33626989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 99
Target Start/End: Complemental strand, 42143369 - 42143323
Alignment:
Q  53 ctcaattctatcaaaatcaattctcaccaccgctataccaaacacac 99  Q
    ||||||| ||||| ||||||||||| ||||||| |||||||||||||    
T  42143369 ctcaattatatcataatcaattctcgccaccgccataccaaacacac 42143323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 103
Target Start/End: Complemental strand, 45147266 - 45147220
Alignment:
Q  57 attctatcaaaatcaattctcaccaccgctataccaaacacacacta 103  Q
    |||||||||||||||||||||||| ||||   |||||||||||||||    
T  45147266 attctatcaaaatcaattctcaccgccgccgaaccaaacacacacta 45147220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 2e-20; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 53 - 103
Target Start/End: Complemental strand, 33899010 - 33898960
Alignment:
Q  53 ctcaattctatcaaaatcaattctcaccaccgctataccaaacacacacta 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33899010 ctcaattctatcaaaatcaattctcaccaccgctataccaaacacacacta 33898960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 53 - 102
Target Start/End: Original strand, 13739301 - 13739350
Alignment:
Q  53 ctcaattctatcaaaatcaattctcaccaccgctataccaaacacacact 102  Q
    ||||||||||||||||||||||||| ||||||| ||||||||||||||||    
T  13739301 ctcaattctatcaaaatcaattctcgccaccgccataccaaacacacact 13739350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 53 - 102
Target Start/End: Original strand, 13744801 - 13744850
Alignment:
Q  53 ctcaattctatcaaaatcaattctcaccaccgctataccaaacacacact 102  Q
    ||||||||||||||||||||||||| ||||||| ||||||||||||||||    
T  13744801 ctcaattctatcaaaatcaattctcgccaccgccataccaaacacacact 13744850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 54 - 102
Target Start/End: Complemental strand, 6208067 - 6208019
Alignment:
Q  54 tcaattctatcaaaatcaattctcaccaccgctataccaaacacacact 102  Q
    ||||||||||||||||||||| || ||||||||||||||||||||||||    
T  6208067 tcaattctatcaaaatcaattatcgccaccgctataccaaacacacact 6208019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 53 - 99
Target Start/End: Complemental strand, 17830003 - 17829957
Alignment:
Q  53 ctcaattctatcaaaatcaattctcaccaccgctataccaaacacac 99  Q
    ||||||||||||||||||||||||| |||| ||||||||||||||||    
T  17830003 ctcaattctatcaaaatcaattctccccacagctataccaaacacac 17829957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 101
Target Start/End: Complemental strand, 29399798 - 29399750
Alignment:
Q  53 ctcaattctatcaaaatcaattctcaccaccgctataccaaacacacac 101  Q
    ||||||||||||||||||||||||| ||||||| | |||||||| ||||    
T  29399798 ctcaattctatcaaaatcaattctctccaccgccaaaccaaacatacac 29399750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 103
Target Start/End: Original strand, 16548216 - 16548255
Alignment:
Q  64 caaaatcaattctcaccaccgctataccaaacacacacta 103  Q
    |||||||||||||| ||||||| |||||||||||||||||    
T  16548216 caaaatcaattctccccaccgccataccaaacacacacta 16548255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 102
Target Start/End: Complemental strand, 1312440 - 1312395
Alignment:
Q  57 attctatcaaaatcaattctcaccaccgctataccaaacacacact 102  Q
    |||||||||||||||||| || ||||||||  ||||||||||||||    
T  1312440 attctatcaaaatcaattttctccaccgctgaaccaaacacacact 1312395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 54 - 99
Target Start/End: Complemental strand, 16442369 - 16442324
Alignment:
Q  54 tcaattctatcaaaatcaattctcaccaccgctataccaaacacac 99  Q
    |||||||| ||||||||||||||| ||||||| | |||||||||||    
T  16442369 tcaattctctcaaaatcaattctccccaccgccaaaccaaacacac 16442324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 101
Target Start/End: Original strand, 10826187 - 10826235
Alignment:
Q  53 ctcaattctatcaaaatcaattctcaccaccgctataccaaacacacac 101  Q
    ||||||| ||||||||| |||||||||| |||| | |||||||||||||    
T  10826187 ctcaattttatcaaaattaattctcaccgccgccaaaccaaacacacac 10826235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 53 - 101
Target Start/End: Complemental strand, 10853272 - 10853224
Alignment:
Q  53 ctcaattctatcaaaatcaattctcaccaccgctataccaaacacacac 101  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  10853272 ctcaattctatcaaaatcaattctcaccaccgctataccaaacacacac 10853224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 53 - 101
Target Start/End: Original strand, 26519760 - 26519808
Alignment:
Q  53 ctcaattctatcaaaatcaattctcaccaccgctataccaaacacacac 101  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  26519760 ctcaattctatcaaaatcaattctccccaccgctataccaaacacacac 26519808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 53 - 103
Target Start/End: Original strand, 3348339 - 3348389
Alignment:
Q  53 ctcaattctatcaaaatcaattctcaccaccgctataccaaacacacacta 103  Q
    ||||||||||||||||||||||||| |||||||||| ||||||||||||||    
T  3348339 ctcaattctatcaaaatcaattctcgccaccgctatgccaaacacacacta 3348389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 53 - 103
Target Start/End: Original strand, 50664854 - 50664904
Alignment:
Q  53 ctcaattctatcaaaatcaattctcaccaccgctataccaaacacacacta 103  Q
    ||||||||||||||||||||||||| ||||||| |||||||||||||||||    
T  50664854 ctcaattctatcaaaatcaattctcgccaccgccataccaaacacacacta 50664904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 54 - 103
Target Start/End: Complemental strand, 44939420 - 44939371
Alignment:
Q  54 tcaattctatcaaaatcaattctcaccaccgctataccaaacacacacta 103  Q
    ||||||||||||||||||||| || |||||||||||||||||||||||||    
T  44939420 tcaattctatcaaaatcaattatcgccaccgctataccaaacacacacta 44939371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 53 - 95
Target Start/End: Original strand, 35930834 - 35930876
Alignment:
Q  53 ctcaattctatcaaaatcaattctcaccaccgctataccaaac 95  Q
    |||||||||||||||||||||||||||||||| ||||||||||    
T  35930834 ctcaattctatcaaaatcaattctcaccaccgatataccaaac 35930876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 54 - 103
Target Start/End: Original strand, 4984678 - 4984727
Alignment:
Q  54 tcaattctatcaaaatcaattctcaccaccgctataccaaacacacacta 103  Q
    |||||| ||||||||||||||||| ||||||| |||||||||||||||||    
T  4984678 tcaattatatcaaaatcaattctccccaccgccataccaaacacacacta 4984727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 57 - 102
Target Start/End: Original strand, 20813245 - 20813290
Alignment:
Q  57 attctatcaaaatcaattctcaccaccgctataccaaacacacact 102  Q
    ||||||||||||||||||||| |||||| |||||||||||||||||    
T  20813245 attctatcaaaatcaattctctccaccgatataccaaacacacact 20813290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 53 - 98
Target Start/End: Original strand, 35930884 - 35930929
Alignment:
Q  53 ctcaattctatcaaaatcaattctcaccaccgctataccaaacaca 98  Q
    |||||||||||||||||||||||||||||||  |||||||||||||    
T  35930884 ctcaattctatcaaaatcaattctcaccaccagtataccaaacaca 35930929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 53 - 102
Target Start/End: Original strand, 55154597 - 55154646
Alignment:
Q  53 ctcaattctatcaaaatcaattctcaccaccgctataccaaacacacact 102  Q
    ||||||||||||||||||||||||| |||| || ||||||||||||||||    
T  55154597 ctcaattctatcaaaatcaattctcgccactgccataccaaacacacact 55154646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 54 - 102
Target Start/End: Complemental strand, 38125446 - 38125398
Alignment:
Q  54 tcaattctatcaaaatcaattctcaccaccgctataccaaacacacact 102  Q
    ||||||||||||||||||||||||  |||||| ||||||||||||||||    
T  38125446 tcaattctatcaaaatcaattctcgtcaccgccataccaaacacacact 38125398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 57 - 101
Target Start/End: Original strand, 38340905 - 38340949
Alignment:
Q  57 attctatcaaaatcaattctcaccaccgctataccaaacacacac 101  Q
    ||||||||||||||||||||||||| ||| |||||||||||||||    
T  38340905 attctatcaaaatcaattctcaccaacgccataccaaacacacac 38340949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 53 - 101
Target Start/End: Original strand, 42318425 - 42318473
Alignment:
Q  53 ctcaattctatcaaaatcaattctcaccaccgctataccaaacacacac 101  Q
    |||||||||||||||||||||| ||  ||||||||||||||||||||||    
T  42318425 ctcaattctatcaaaatcaattatcgtcaccgctataccaaacacacac 42318473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 53 - 103
Target Start/End: Original strand, 10334234 - 10334284
Alignment:
Q  53 ctcaattctatcaaaatcaattctcaccaccgctataccaaacacacacta 103  Q
    |||||||||||||||||||||||||  |||||| ||| |||||||||||||    
T  10334234 ctcaattctatcaaaatcaattctcgtcaccgccatatcaaacacacacta 10334284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 53 - 103
Target Start/End: Original strand, 23496413 - 23496463
Alignment:
Q  53 ctcaattctatcaaaatcaattctcaccaccgctataccaaacacacacta 103  Q
    |||||||||||||||||||||||||  | |||| |||||||||||||||||    
T  23496413 ctcaattctatcaaaatcaattctcctcgccgccataccaaacacacacta 23496463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 102
Target Start/End: Complemental strand, 31618417 - 31618368
Alignment:
Q  53 ctcaattctatcaaaatcaattctcaccaccgctataccaaacacacact 102  Q
    ||||||||||||||||||||||||  ||||||  ||||||||||||||||    
T  31618417 ctcaattctatcaaaatcaattcttcccaccgtcataccaaacacacact 31618368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 102
Target Start/End: Complemental strand, 38172312 - 38172263
Alignment:
Q  53 ctcaattctatcaaaatcaattctcaccaccgctataccaaacacacact 102  Q
    ||||||||||| ||||||||||||| ||||||| | ||||||||||||||    
T  38172312 ctcaattctattaaaatcaattctccccaccgccaaaccaaacacacact 38172263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 102
Target Start/End: Complemental strand, 48189447 - 48189398
Alignment:
Q  53 ctcaattctatcaaaatcaattctcaccaccgctataccaaacacacact 102  Q
    |||||||||||||||||||||| || |||||||  |||||||||||||||    
T  48189447 ctcaattctatcaaaatcaattatcgccaccgccctaccaaacacacact 48189398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 102
Target Start/End: Complemental strand, 15511376 - 15511332
Alignment:
Q  58 ttctatcaaaatcaattctcaccaccgctataccaaacacacact 102  Q
    ||||||||||||||||| || ||||||| ||||||||||||||||    
T  15511376 ttctatcaaaatcaattatcgccaccgccataccaaacacacact 15511332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 105
Target Start/End: Complemental strand, 52966813 - 52966762
Alignment:
Q  54 tcaattctatcaaaatcaattctcaccaccgctataccaaacacacactaca 105  Q
    ||||||||||||||||||||| || ||||| | | |||||||||||||||||    
T  52966813 tcaattctatcaaaatcaattttctccacctccaaaccaaacacacactaca 52966762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 99
Target Start/End: Complemental strand, 8424735 - 8424689
Alignment:
Q  53 ctcaattctatcaaaatcaattctcaccaccgctataccaaacacac 99  Q
    ||||||||||||||| |||||| | ||||||||||||| ||||||||    
T  8424735 ctcaattctatcaaattcaattatgaccaccgctatactaaacacac 8424689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 101
Target Start/End: Complemental strand, 30809970 - 30809917
Alignment:
Q  48 ccaatctcaattctatcaaaatcaattctcaccaccgctataccaaacacacac 101  Q
    |||| ||||||| ||||||||||||||||| || |||| |||||||||| ||||    
T  30809970 ccaaactcaattttatcaaaatcaattctccccgccgccataccaaacatacac 30809917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 54 - 103
Target Start/End: Complemental strand, 30811536 - 30811487
Alignment:
Q  54 tcaattctatcaaaatcaattctcaccaccgctataccaaacacacacta 103  Q
    |||||| |||||||||||||||||  ||||||  ||||||||||||||||    
T  30811536 tcaattatatcaaaatcaattctcgtcaccgccctaccaaacacacacta 30811487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 54 - 99
Target Start/End: Original strand, 31084289 - 31084334
Alignment:
Q  54 tcaattctatcaaaatcaattctcaccaccgctataccaaacacac 99  Q
    |||||||| ||||||||||||||| ||||||| | |||||||||||    
T  31084289 tcaattctttcaaaatcaattctcgccaccgccaaaccaaacacac 31084334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 53 - 103
Target Start/End: Original strand, 2215357 - 2215407
Alignment:
Q  53 ctcaattctatcaaaatcaattctcaccaccgctataccaaacacacacta 103  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  2215357 ctcaattctatcaaaatcaattctcacaaccgctataccaaacacacacta 2215407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 53 - 101
Target Start/End: Original strand, 2213611 - 2213659
Alignment:
Q  53 ctcaattctatcaaaatcaattctcaccaccgctataccaaacacacac 101  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  2213611 ctcaattctatcaaaatcaattctccccaccgctataccaaacacacac 2213659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 56 - 101
Target Start/End: Complemental strand, 28127287 - 28127242
Alignment:
Q  56 aattctatcaaaatcaattctcaccaccgctataccaaacacacac 101  Q
    |||||||||||||||||||||| |||||||||||||||||||||||    
T  28127287 aattctatcaaaatcaattctccccaccgctataccaaacacacac 28127242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 53 - 102
Target Start/End: Original strand, 36548304 - 36548353
Alignment:
Q  53 ctcaattctatcaaaatcaattctcaccaccgctataccaaacacacact 102  Q
    |||||||||||||||||||||| |||||||||| ||||||||||||||||    
T  36548304 ctcaattctatcaaaatcaattttcaccaccgccataccaaacacacact 36548353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 53 - 103
Target Start/End: Complemental strand, 9988504 - 9988454
Alignment:
Q  53 ctcaattctatcaaaatcaattctcaccaccgctataccaaacacacacta 103  Q
    ||||||||||||||||||||||||| ||||||| | |||||||||||||||    
T  9988504 ctcaattctatcaaaatcaattctccccaccgccaaaccaaacacacacta 9988454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 53 - 102
Target Start/End: Complemental strand, 1945042 - 1944993
Alignment:
Q  53 ctcaattctatcaaaatcaattctcaccaccgctataccaaacacacact 102  Q
    ||||||||||||||||||||||||| || |||| ||||||||||||||||    
T  1945042 ctcaattctatcaaaatcaattctccccgccgccataccaaacacacact 1944993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 53 - 101
Target Start/End: Complemental strand, 7472677 - 7472629
Alignment:
Q  53 ctcaattctatcaaaatcaattctcaccaccgctataccaaacacacac 101  Q
    ||||||||||||||||||||||||| ||||||  |||||||||||||||    
T  7472677 ctcaattctatcaaaatcaattctcgccaccgtcataccaaacacacac 7472629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 53 - 100
Target Start/End: Original strand, 32502090 - 32502137
Alignment:
Q  53 ctcaattctatcaaaatcaattctcaccaccgctataccaaacacaca 100  Q
    |||||||||||||||||||||| |||| ||||| ||||||||||||||    
T  32502090 ctcaattctatcaaaatcaattttcacgaccgccataccaaacacaca 32502137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 103
Target Start/End: Original strand, 36312384 - 36312431
Alignment:
Q  56 aattctatcaaaatcaattctcaccaccgctataccaaacacacacta 103  Q
    |||||||||||||||||||||| || |||| |||||||||||||||||    
T  36312384 aattctatcaaaatcaattctccccgccgccataccaaacacacacta 36312431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 56 - 102
Target Start/End: Complemental strand, 5916242 - 5916196
Alignment:
Q  56 aattctatcaaaatcaattctcaccaccgctataccaaacacacact 102  Q
    |||||||||||||||||||||| || |||| ||||||||||||||||    
T  5916242 aattctatcaaaatcaattctccccgccgccataccaaacacacact 5916196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 62 - 104
Target Start/End: Complemental strand, 43436305 - 43436263
Alignment:
Q  62 atcaaaatcaattctcaccaccgctataccaaacacacactac 104  Q
    |||||||||||||||| ||||||| ||||||||||||||||||    
T  43436305 atcaaaatcaattctcgccaccgccataccaaacacacactac 43436263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 102
Target Start/End: Original strand, 8170417 - 8170466
Alignment:
Q  53 ctcaattctatcaaaatcaattctcaccaccgctataccaaacacacact 102  Q
    ||||||||||||||||| ||||||| |||||||  |||||||||||||||    
T  8170417 ctcaattctatcaaaattaattctcgccaccgccctaccaaacacacact 8170466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 102
Target Start/End: Complemental strand, 44619064 - 44619015
Alignment:
Q  53 ctcaattctatcaaaatcaattctcaccaccgctataccaaacacacact 102  Q
    ||||||||||||||||||||||||| ||| || |||| ||||||||||||    
T  44619064 ctcaattctatcaaaatcaattctcgccatcggtatatcaaacacacact 44619015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 53 - 100
Target Start/End: Complemental strand, 30007556 - 30007509
Alignment:
Q  53 ctcaattctatcaaaatcaattctcaccaccgctataccaaacacaca 100  Q
    ||||||||||||||||||||||||| |||| || |||||| |||||||    
T  30007556 ctcaattctatcaaaatcaattctccccacagccataccatacacaca 30007509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 53 - 104
Target Start/End: Complemental strand, 31562690 - 31562639
Alignment:
Q  53 ctcaattctatcaaaatcaattctcaccaccgctataccaaacacacactac 104  Q
    ||||||| ||||||||||||||||| ||||| | ||||||||||| ||||||    
T  31562690 ctcaattttatcaaaatcaattctcgccaccaccataccaaacacgcactac 31562639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 99
Target Start/End: Complemental strand, 34433309 - 34433263
Alignment:
Q  53 ctcaattctatcaaaatcaattctcaccaccgctataccaaacacac 99  Q
    |||||||||||||||||||||||||  |||||||  |||||||||||    
T  34433309 ctcaattctatcaaaatcaattctcttcaccgctgaaccaaacacac 34433263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 98
Target Start/End: Original strand, 14821267 - 14821312
Alignment:
Q  53 ctcaattctatcaaaatcaattctcaccaccgctataccaaacaca 98  Q
    ||||||||||||||||| |||| ||  |||||||||||||||||||    
T  14821267 ctcaattctatcaaaattaattatcgtcaccgctataccaaacaca 14821312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 101
Target Start/End: Original strand, 2213752 - 2213800
Alignment:
Q  53 ctcaattctatcaaaatcaattctcaccaccgctataccaaacacacac 101  Q
    ||||||||||||||||||||||||| |  | || |||||||||||||||    
T  2213752 ctcaattctatcaaaatcaattctctcatctgccataccaaacacacac 2213800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 101
Target Start/End: Complemental strand, 25747885 - 25747837
Alignment:
Q  53 ctcaattctatcaaaatcaattctcaccaccgctataccaaacacacac 101  Q
    ||||||||||||||| |||||| ||||||||||   |||||||||||||    
T  25747885 ctcaattctatcaaactcaattatcaccaccgcggaaccaaacacacac 25747837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 101
Target Start/End: Complemental strand, 39141473 - 39141425
Alignment:
Q  53 ctcaattctatcaaaatcaattctcaccaccgctataccaaacacacac 101  Q
    ||||||| ||||||||||||||||| |||||||   |||||||||||||    
T  39141473 ctcaattatatcaaaatcaattctcgccaccgcccaaccaaacacacac 39141425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 53 - 102
Target Start/End: Original strand, 35760299 - 35760348
Alignment:
Q  53 ctcaattctatcaaaatcaattctcaccaccgctataccaaacacacact 102  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  35760299 ctcaattctatcaaaatcaattctccccaccgctataccaaacacacact 35760348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 53 - 103
Target Start/End: Complemental strand, 8049053 - 8049003
Alignment:
Q  53 ctcaattctatcaaaatcaattctcaccaccgctataccaaacacacacta 103  Q
    |||||||||||||||||||||||||||| ||||||||||||| ||||||||    
T  8049053 ctcaattctatcaaaatcaattctcaccgccgctataccaaagacacacta 8049003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 53 - 103
Target Start/End: Original strand, 32030824 - 32030874
Alignment:
Q  53 ctcaattctatcaaaatcaattctcaccaccgctataccaaacacacacta 103  Q
    ||||||||||||||||||||||||| ||||| |||||||||||||||||||    
T  32030824 ctcaattctatcaaaatcaattctctccaccactataccaaacacacacta 32030874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 54 - 103
Target Start/End: Original strand, 24045941 - 24045990
Alignment:
Q  54 tcaattctatcaaaatcaattctcaccaccgctataccaaacacacacta 103  Q
    |||||||||||||||||||||||||||||||| |||||||||||| ||||    
T  24045941 tcaattctatcaaaatcaattctcaccaccgccataccaaacacatacta 24045990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 53 - 102
Target Start/End: Complemental strand, 39987969 - 39987920
Alignment:
Q  53 ctcaattctatcaaaatcaattctcaccaccgctataccaaacacacact 102  Q
    |||||||||||||||||||||||||||| ||| |||||||||||||||||    
T  39987969 ctcaattctatcaaaatcaattctcaccgccggtataccaaacacacact 39987920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 53 - 101
Target Start/End: Original strand, 3667964 - 3668012
Alignment:
Q  53 ctcaattctatcaaaatcaattctcaccaccgctataccaaacacacac 101  Q
    ||||||||||||||||||||||||| ||||| |||||||||||||||||    
T  3667964 ctcaattctatcaaaatcaattctctccaccactataccaaacacacac 3668012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 56 - 103
Target Start/End: Complemental strand, 7385931 - 7385884
Alignment:
Q  56 aattctatcaaaatcaattctcaccaccgctataccaaacacacacta 103  Q
    ||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  7385931 aattctatcaaaatcaattctcaccgccgctatactaaacacacacta 7385884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 53 - 103
Target Start/End: Original strand, 40885321 - 40885371
Alignment:
Q  53 ctcaattctatcaaaatcaattctcaccaccgctataccaaacacacacta 103  Q
    |||||||||| ||||||||||| |||||||||| |||||||||||||||||    
T  40885321 ctcaattctaacaaaatcaattttcaccaccgccataccaaacacacacta 40885371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 57 - 102
Target Start/End: Complemental strand, 5710384 - 5710339
Alignment:
Q  57 attctatcaaaatcaattctcaccaccgctataccaaacacacact 102  Q
    ||||||||||||||||||||| ||||||| ||||||||||||||||    
T  5710384 attctatcaaaatcaattctcgccaccgccataccaaacacacact 5710339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 56 - 101
Target Start/End: Original strand, 41835005 - 41835050
Alignment:
Q  56 aattctatcaaaatcaattctcaccaccgctataccaaacacacac 101  Q
    |||||||||||||||||||||| ||||||| |||||||||||||||    
T  41835005 aattctatcaaaatcaattctccccaccgccataccaaacacacac 41835050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 54 - 102
Target Start/End: Original strand, 22482300 - 22482348
Alignment:
Q  54 tcaattctatcaaaatcaattctcaccaccgctataccaaacacacact 102  Q
    |||||||||||||||||||||||| || |||| ||||||||||||||||    
T  22482300 tcaattctatcaaaatcaattctccccgccgccataccaaacacacact 22482348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 53 - 103
Target Start/End: Original strand, 32454646 - 32454697
Alignment:
Q  53 ctcaattcta-tcaaaatcaattctcaccaccgctataccaaacacacacta 103  Q
    |||||||||| ||||||||||||||| ||||||| |||||||||||||||||    
T  32454646 ctcaattctaatcaaaatcaattctcgccaccgccataccaaacacacacta 32454697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 53 - 103
Target Start/End: Original strand, 10058184 - 10058234
Alignment:
Q  53 ctcaattctatcaaaatcaattctcaccaccgctataccaaacacacacta 103  Q
    ||||||| ||||||||||||||||| ||||||| |||| ||||||||||||    
T  10058184 ctcaattatatcaaaatcaattctccccaccgccatactaaacacacacta 10058234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 53 - 103
Target Start/End: Complemental strand, 40495360 - 40495310
Alignment:
Q  53 ctcaattctatcaaaatcaattctcaccaccgctataccaaacacacacta 103  Q
    ||||||||||||||||||||||||  || |||| |||||||||||||||||    
T  40495360 ctcaattctatcaaaatcaattcttcccgccgccataccaaacacacacta 40495310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 53 - 103
Target Start/End: Complemental strand, 40791072 - 40791022
Alignment:
Q  53 ctcaattctatcaaaatcaattctcaccaccgctataccaaacacacacta 103  Q
    ||||||||||||||||||||||||| || |||  |||||||||||||||||    
T  40791072 ctcaattctatcaaaatcaattctccccgccgtgataccaaacacacacta 40791022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 102
Target Start/End: Original strand, 42146417 - 42146466
Alignment:
Q  53 ctcaattctatcaaaatcaattctcaccaccgctataccaaacacacact 102  Q
    ||||||||||||||||||||||||| || |||  ||||||||||||||||    
T  42146417 ctcaattctatcaaaatcaattctccccgccgtcataccaaacacacact 42146466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 101
Target Start/End: Complemental strand, 33953904 - 33953856
Alignment:
Q  53 ctcaattctatcaaaatcaattctcaccaccgctataccaaacacacac 101  Q
    |||||||||| ||||||||||| ||||||| || |||||||||||||||    
T  33953904 ctcaattctaccaaaatcaattttcaccactgccataccaaacacacac 33953856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 53 - 100
Target Start/End: Complemental strand, 13253085 - 13253038
Alignment:
Q  53 ctcaattctatcaaaatcaattctcaccaccgctataccaaacacaca 100  Q
    ||||||||||||||||||||||||| |||||||   ||||||||||||    
T  13253085 ctcaattctatcaaaatcaattctcgccaccgcccaaccaaacacaca 13253038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 98
Target Start/End: Original strand, 7715050 - 7715095
Alignment:
Q  53 ctcaattctatcaaaatcaattctcaccaccgctataccaaacaca 98  Q
    |||||||||||||||||||||| | |||||||| |||| |||||||    
T  7715050 ctcaattctatcaaaatcaatttttaccaccgccatacaaaacaca 7715095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 105
Target Start/End: Original strand, 27021238 - 27021290
Alignment:
Q  53 ctcaattctatcaaaatcaattctcaccaccgctataccaaacacacactaca 105  Q
    ||||||| ||||||||||| |||| |||||||| | |||||||||| ||||||    
T  27021238 ctcaattatatcaaaatcagttctaaccaccgccaaaccaaacacatactaca 27021290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 53 - 101
Target Start/End: Original strand, 14072583 - 14072631
Alignment:
Q  53 ctcaattctatcaaaatcaattctcaccaccgctataccaaacacacac 101  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  14072583 ctcaattctatcaaaatcaattctcaccaccgccataccaaacacacac 14072631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 53 - 103
Target Start/End: Complemental strand, 9889340 - 9889290
Alignment:
Q  53 ctcaattctatcaaaatcaattctcaccaccgctataccaaacacacacta 103  Q
    ||||||||||||||||||||||||||||||||| |||||||||||| ||||    
T  9889340 ctcaattctatcaaaatcaattctcaccaccgccataccaaacacatacta 9889290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 53 - 103
Target Start/End: Original strand, 28987099 - 28987149
Alignment:
Q  53 ctcaattctatcaaaatcaattctcaccaccgctataccaaacacacacta 103  Q
    |||||||||||||||||||||| |||||||||| |||||||||||||||||    
T  28987099 ctcaattctatcaaaatcaattttcaccaccgccataccaaacacacacta 28987149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 53 - 103
Target Start/End: Complemental strand, 29149312 - 29149262
Alignment:
Q  53 ctcaattctatcaaaatcaattctcaccaccgctataccaaacacacacta 103  Q
    ||||||||||||||||||||||||| |||||||||||||||| ||||||||    
T  29149312 ctcaattctatcaaaatcaattctccccaccgctataccaaatacacacta 29149262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 53 - 102
Target Start/End: Complemental strand, 32238064 - 32238015
Alignment:
Q  53 ctcaattctatcaaaatcaattctcaccaccgctataccaaacacacact 102  Q
    |||||||||||||||||||||| || ||||||||||||||||||||||||    
T  32238064 ctcaattctatcaaaatcaattatcgccaccgctataccaaacacacact 32238015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 53 - 102
Target Start/End: Complemental strand, 46830074 - 46830025
Alignment:
Q  53 ctcaattctatcaaaatcaattctcaccaccgctataccaaacacacact 102  Q
    ||||||||||||||||||||||||| ||||||| ||||||||||||||||    
T  46830074 ctcaattctatcaaaatcaattctcgccaccgccataccaaacacacact 46830025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 54 - 98
Target Start/End: Original strand, 9893793 - 9893837
Alignment:
Q  54 tcaattctatcaaaatcaattctcaccaccgctataccaaacaca 98  Q
    |||||||||||||||||||||||||||||||| ||||||||||||    
T  9893793 tcaattctatcaaaatcaattctcaccaccgccataccaaacaca 9893837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 54 - 102
Target Start/End: Original strand, 48550299 - 48550347
Alignment:
Q  54 tcaattctatcaaaatcaattctcaccaccgctataccaaacacacact 102  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||||    
T  48550299 tcaattctatcaaaatcaattctcgccaccgccataccaaacacacact 48550347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 53 - 100
Target Start/End: Complemental strand, 43781524 - 43781477
Alignment:
Q  53 ctcaattctatcaaaatcaattctcaccaccgctataccaaacacaca 100  Q
    ||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  43781524 ctcaattctatcaaaatcaattctcgccaccgccataccaaacacaca 43781477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 53 - 103
Target Start/End: Original strand, 39187815 - 39187865
Alignment:
Q  53 ctcaattctatcaaaatcaattctcaccaccgctataccaaacacacacta 103  Q
    ||||||||||||||||||||||||| ||||||| | |||||||||||||||    
T  39187815 ctcaattctatcaaaatcaattctctccaccgccaaaccaaacacacacta 39187865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 53 - 103
Target Start/End: Original strand, 54150607 - 54150657
Alignment:
Q  53 ctcaattctatcaaaatcaattctcaccaccgctataccaaacacacacta 103  Q
    ||||||||||||||||||||||||  ||||||| |||||||||||||||||    
T  54150607 ctcaattctatcaaaatcaattcttgccaccgccataccaaacacacacta 54150657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 53 - 102
Target Start/End: Complemental strand, 19592236 - 19592187
Alignment:
Q  53 ctcaattctatcaaaatcaattctcaccaccgctataccaaacacacact 102  Q
    ||||||||||||||||||||||||| ||||||| ||| ||||||||||||    
T  19592236 ctcaattctatcaaaatcaattctccccaccgccatatcaaacacacact 19592187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 53 - 101
Target Start/End: Complemental strand, 6138625 - 6138577
Alignment:
Q  53 ctcaattctatcaaaatcaattctcaccaccgctataccaaacacacac 101  Q
    ||||||||||||||||||||||||| ||||||| | |||||||||||||    
T  6138625 ctcaattctatcaaaatcaattctccccaccgccaaaccaaacacacac 6138577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 53 - 101
Target Start/End: Complemental strand, 26426120 - 26426072
Alignment:
Q  53 ctcaattctatcaaaatcaattctcaccaccgctataccaaacacacac 101  Q
    ||||||||||||||||||||||||| ||||||  |||||||||||||||    
T  26426120 ctcaattctatcaaaatcaattctccccaccgtcataccaaacacacac 26426072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 53 - 100
Target Start/End: Original strand, 39636866 - 39636913
Alignment:
Q  53 ctcaattctatcaaaatcaattctcaccaccgctataccaaacacaca 100  Q
    ||||||||||||||||||||||||| ||||||  ||||||||||||||    
T  39636866 ctcaattctatcaaaatcaattctcgccaccgtcataccaaacacaca 39636913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 53 - 99
Target Start/End: Original strand, 30842212 - 30842258
Alignment:
Q  53 ctcaattctatcaaaatcaattctcaccaccgctataccaaacacac 99  Q
    |||||||||||||||||||||||||  |||||| |||||||||||||    
T  30842212 ctcaattctatcaaaatcaattctcgtcaccgccataccaaacacac 30842258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 102
Target Start/End: Original strand, 15603441 - 15603490
Alignment:
Q  53 ctcaattctatcaaaatcaattctcaccaccgctataccaaacacacact 102  Q
    ||||||||||||||||||||||||| ||||||  | ||||||||||||||    
T  15603441 ctcaattctatcaaaatcaattctccccaccgtcaaaccaaacacacact 15603490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 57 - 102
Target Start/End: Complemental strand, 26459897 - 26459852
Alignment:
Q  57 attctatcaaaatcaattctcaccaccgctataccaaacacacact 102  Q
    ||||||||||||| ||||||| ||||||| ||||||||||||||||    
T  26459897 attctatcaaaattaattctcgccaccgccataccaaacacacact 26459852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 101
Target Start/End: Complemental strand, 26651850 - 26651805
Alignment:
Q  56 aattctatcaaaatcaattctcaccaccgctataccaaacacacac 101  Q
    |||||||||||||||||||||| || |||| |||||||||||||||    
T  26651850 aattctatcaaaatcaattctcgccgccgccataccaaacacacac 26651805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 54 - 103
Target Start/End: Complemental strand, 48550446 - 48550397
Alignment:
Q  54 tcaattctatcaaaatcaattctcaccaccgctataccaaacacacacta 103  Q
    |||||||||||||||||||||||  ||||||| | |||||||||||||||    
T  48550446 tcaattctatcaaaatcaattcttcccaccgccaaaccaaacacacacta 48550397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 102
Target Start/End: Original strand, 15619681 - 15619729
Alignment:
Q  54 tcaattctatcaaaatcaattctcaccaccgctataccaaacacacact 102  Q
    |||||||| ||||| ||||||||| || |||||||||||||||||||||    
T  15619681 tcaattctctcaaactcaattctccccgccgctataccaaacacacact 15619729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 57 - 101
Target Start/End: Complemental strand, 31520372 - 31520328
Alignment:
Q  57 attctatcaaaatcaattctcaccaccgctataccaaacacacac 101  Q
    |||||| |||||||||||||| ||| |||||||||||||||||||    
T  31520372 attctaccaaaatcaattctcgccatcgctataccaaacacacac 31520328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 105
Target Start/End: Original strand, 41866235 - 41866287
Alignment:
Q  53 ctcaattctatcaaaatcaattctcaccaccgctataccaaacacacactaca 105  Q
    ||||||| |||||||||||||| || ||||||| | |||||||||||||||||    
T  41866235 ctcaattttatcaaaatcaattatcgccaccgccaaaccaaacacacactaca 41866287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 103
Target Start/End: Original strand, 14076095 - 14076145
Alignment:
Q  53 ctcaattctatcaaaatcaattctcaccaccgctataccaaacacacacta 103  Q
    |||||||||||||||||||||||||||| |||| | || ||||||| ||||    
T  14076095 ctcaattctatcaaaatcaattctcaccgccgccaaactaaacacatacta 14076145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 103
Target Start/End: Complemental strand, 14564151 - 14564101
Alignment:
Q  53 ctcaattctatcaaaatcaattctcaccaccgctataccaaacacacacta 103  Q
    ||||||||||||||||||||||||| || ||||   |||||||||||||||    
T  14564151 ctcaattctatcaaaatcaattctctccgccgcccaaccaaacacacacta 14564101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 103
Target Start/End: Original strand, 16566386 - 16566436
Alignment:
Q  53 ctcaattctatcaaaatcaattctcaccaccgctataccaaacacacacta 103  Q
    ||||||||||||||||||||||||| |  | || |||||||||||||||||    
T  16566386 ctcaattctatcaaaatcaattctccctgctgccataccaaacacacacta 16566436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 102
Target Start/End: Original strand, 49519811 - 49519863
Alignment:
Q  53 ctcaattctatcaaaatcaattct---caccaccgctataccaaacacacact 102  Q
    |||||||||||||||| |||||||   ||||||||| ||||||||||||||||    
T  49519811 ctcaattctatcaaaaccaattctcaccaccaccgccataccaaacacacact 49519863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 103
Target Start/End: Original strand, 51923021 - 51923071
Alignment:
Q  53 ctcaattctatcaaaatcaattctcaccaccgctataccaaacacacacta 103  Q
    |||||||||| ||||||||||||||  | |||| |||||||||||||||||    
T  51923021 ctcaattctaacaaaatcaattctcgtcgccgccataccaaacacacacta 51923071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 103
Target Start/End: Original strand, 53532058 - 53532108
Alignment:
Q  53 ctcaattctatcaaaatcaattctcaccaccgctataccaaacacacacta 103  Q
    ||||||| |||||||||||||||||||||||||   |||||||||| ||||    
T  53532058 ctcaattttatcaaaatcaattctcaccaccgccgaaccaaacacatacta 53532108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 103
Target Start/End: Complemental strand, 54735656 - 54735606
Alignment:
Q  53 ctcaattctatcaaaatcaattctcaccaccgctataccaaacacacacta 103  Q
    |||||||||||||||||||||||||||| |||| | ||||| |||| ||||    
T  54735656 ctcaattctatcaaaatcaattctcaccgccgccaaaccaagcacatacta 54735606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 98
Target Start/End: Original strand, 54153125 - 54153170
Alignment:
Q  53 ctcaattctatcaaaatcaattctcaccaccgctataccaaacaca 98  Q
    ||||||| ||| |||||||||| || ||||||||||||||||||||    
T  54153125 ctcaattatattaaaatcaattatcgccaccgctataccaaacaca 54153170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 101
Target Start/End: Original strand, 25312796 - 25312844
Alignment:
Q  53 ctcaattctatcaaaatcaattctcaccaccgctataccaaacacacac 101  Q
    |||||||||||||||||||||||||   ||||| | |||||||||||||    
T  25312796 ctcaattctatcaaaatcaattctcgttaccgccaaaccaaacacacac 25312844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 9e-17; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 54 - 102
Target Start/End: Original strand, 6166230 - 6166278
Alignment:
Q  54 tcaattctatcaaaatcaattctcaccaccgctataccaaacacacact 102  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  6166230 tcaattctatcaaaatcaattctcaccaccgcgataccaaacacacact 6166278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 53 - 102
Target Start/End: Original strand, 1199947 - 1199996
Alignment:
Q  53 ctcaattctatcaaaatcaattctcaccaccgctataccaaacacacact 102  Q
    ||||||||||||||||||||||||| ||||||| ||||||||||||||||    
T  1199947 ctcaattctatcaaaatcaattctcgccaccgccataccaaacacacact 1199996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 54 - 103
Target Start/End: Original strand, 26058362 - 26058411
Alignment:
Q  54 tcaattctatcaaaatcaattctcaccaccgctataccaaacacacacta 103  Q
    |||||||||||||||||||||||| ||||||| |||||||||||||||||    
T  26058362 tcaattctatcaaaatcaattctcgccaccgccataccaaacacacacta 26058411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 53 - 102
Target Start/End: Complemental strand, 42850225 - 42850176
Alignment:
Q  53 ctcaattctatcaaaatcaattctcaccaccgctataccaaacacacact 102  Q
    ||||||||||||||||||||||||| ||||||| ||||||||||||||||    
T  42850225 ctcaattctatcaaaatcaattctcgccaccgccataccaaacacacact 42850176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 53 - 102
Target Start/End: Complemental strand, 43728884 - 43728835
Alignment:
Q  53 ctcaattctatcaaaatcaattctcaccaccgctataccaaacacacact 102  Q
    ||||||||||||||||||||||||| ||| ||||||||||||||||||||    
T  43728884 ctcaattctatcaaaatcaattctctccatcgctataccaaacacacact 43728835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 53 - 102
Target Start/End: Original strand, 50406250 - 50406299
Alignment:
Q  53 ctcaattctatcaaaatcaattctcaccaccgctataccaaacacacact 102  Q
    ||||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  50406250 ctcaattttatcaaaatcaattctcgccaccgctataccaaacacacact 50406299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 53 - 100
Target Start/End: Complemental strand, 11023336 - 11023289
Alignment:
Q  53 ctcaattctatcaaaatcaattctcaccaccgctataccaaacacaca 100  Q
    |||||||||||||||||||||| |||||||||| ||||||||||||||    
T  11023336 ctcaattctatcaaaatcaattttcaccaccgccataccaaacacaca 11023289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 53 - 103
Target Start/End: Original strand, 10470709 - 10470759
Alignment:
Q  53 ctcaattctatcaaaatcaattctcaccaccgctataccaaacacacacta 103  Q
    ||||||||||||||||||||||||| |||||||  ||||||||||||||||    
T  10470709 ctcaattctatcaaaatcaattctcgccaccgccctaccaaacacacacta 10470759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 53 - 103
Target Start/End: Original strand, 12247539 - 12247589
Alignment:
Q  53 ctcaattctatcaaaatcaattctcaccaccgctataccaaacacacacta 103  Q
    ||||||||||| |||||||||| ||| ||||||||||||||||||||||||    
T  12247539 ctcaattctattaaaatcaattttcatcaccgctataccaaacacacacta 12247589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 54 - 103
Target Start/End: Complemental strand, 27801657 - 27801608
Alignment:
Q  54 tcaattctatcaaaatcaattctcaccaccgctataccaaacacacacta 103  Q
    |||||||||||||||||||||||| ||||||  |||||||||||||||||    
T  27801657 tcaattctatcaaaatcaattctcgccaccgtcataccaaacacacacta 27801608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 54 - 103
Target Start/End: Complemental strand, 35569207 - 35569158
Alignment:
Q  54 tcaattctatcaaaatcaattctcaccaccgctataccaaacacacacta 103  Q
    |||||||||||||||||||||||| || |||| |||||||||||||||||    
T  35569207 tcaattctatcaaaatcaattctccccgccgccataccaaacacacacta 35569158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 57 - 102
Target Start/End: Complemental strand, 50977342 - 50977297
Alignment:
Q  57 attctatcaaaatcaattctcaccaccgctataccaaacacacact 102  Q
    ||||||||||||||||||||| ||||||| ||||||||||||||||    
T  50977342 attctatcaaaatcaattctcgccaccgccataccaaacacacact 50977297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 54 - 102
Target Start/End: Complemental strand, 20800282 - 20800234
Alignment:
Q  54 tcaattctatcaaaatcaattctcaccaccgctataccaaacacacact 102  Q
    |||||||||||||||||||||||| || |||| ||||||||||||||||    
T  20800282 tcaattctatcaaaatcaattctccccgccgccataccaaacacacact 20800234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 53 - 96
Target Start/End: Original strand, 45710168 - 45710211
Alignment:
Q  53 ctcaattctatcaaaatcaattctcaccaccgctataccaaaca 96  Q
    |||||||||||||||||||||| || ||||||||||||||||||    
T  45710168 ctcaattctatcaaaatcaattatcgccaccgctataccaaaca 45710211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 53 - 112
Target Start/End: Original strand, 47123506 - 47123565
Alignment:
Q  53 ctcaattctatcaaaatcaattctcaccaccgctataccaaacacacactacatcaaatt 112  Q
    |||||||||||||||||||||| |  ||||||| ||||||||||||||||| | ||||||    
T  47123506 ctcaattctatcaaaatcaatttttgccaccgccataccaaacacacactaaaacaaatt 47123565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 57 - 103
Target Start/End: Original strand, 13056121 - 13056167
Alignment:
Q  57 attctatcaaaatcaattctcaccaccgctataccaaacacacacta 103  Q
    |||||||||||||||||| || ||||||| |||||||||||||||||    
T  13056121 attctatcaaaatcaattatcgccaccgccataccaaacacacacta 13056167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 53 - 103
Target Start/End: Original strand, 13931742 - 13931791
Alignment:
Q  53 ctcaattctatcaaaatcaattctcaccaccgctataccaaacacacacta 103  Q
    ||||||||||||||||||||| | ||||||||| |||||||||||||||||    
T  13931742 ctcaattctatcaaaatcaatcc-caccaccgccataccaaacacacacta 13931791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 102
Target Start/End: Original strand, 31223494 - 31223543
Alignment:
Q  53 ctcaattctatcaaaatcaattctcaccaccgctataccaaacacacact 102  Q
    ||||||||||| ||||||||||||| ||||||| | ||||||||||||||    
T  31223494 ctcaattctattaaaatcaattctccccaccgccaaaccaaacacacact 31223543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 102
Target Start/End: Original strand, 48511028 - 48511077
Alignment:
Q  53 ctcaattctatcaaaatcaattctcaccaccgctataccaaacacacact 102  Q
    |||||||| |||||||||||||||| || |||| ||||||||||||||||    
T  48511028 ctcaattcaatcaaaatcaattctcgccgccgccataccaaacacacact 48511077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 102
Target Start/End: Complemental strand, 7826359 - 7826311
Alignment:
Q  54 tcaattctatcaaaatcaattctcaccaccgctataccaaacacacact 102  Q
    ||||||||||||||||||||| || ||||||| | ||||||||||||||    
T  7826359 tcaattctatcaaaatcaattttctccaccgccaaaccaaacacacact 7826311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 53 - 100
Target Start/End: Original strand, 25230126 - 25230173
Alignment:
Q  53 ctcaattctatcaaaatcaattctcaccaccgctataccaaacacaca 100  Q
    |||| |||||||||||||||||||| ||||||  ||||||||||||||    
T  25230126 ctcagttctatcaaaatcaattctcgccaccgtcataccaaacacaca 25230173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 103
Target Start/End: Original strand, 35536191 - 35536241
Alignment:
Q  53 ctcaattctatcaaaatcaattctcaccaccgctataccaaacacacacta 103  Q
    ||||||||||| ||||| |||| ||| |||||| |||||||||||||||||    
T  35536191 ctcaattctattaaaattaattttcatcaccgccataccaaacacacacta 35536241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 54 - 99
Target Start/End: Original strand, 6061263 - 6061308
Alignment:
Q  54 tcaattctatcaaaatcaattctcaccaccgctataccaaacacac 99  Q
    ||||||||||||||||||||| |||||||||  | |||||||||||    
T  6061263 tcaattctatcaaaatcaattttcaccaccgtcaaaccaaacacac 6061308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 106
Target Start/End: Original strand, 12468332 - 12468384
Alignment:
Q  53 ctcaattctatcaaaatcaattctcaccaccgctataccaaacacacactacat 106  Q
    ||||||||||||||| ||||||||  || |||| ||||||||||||||||||||    
T  12468332 ctcaattctatcaaa-tcaattcttcccgccgccataccaaacacacactacat 12468384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 54 - 103
Target Start/End: Original strand, 40352511 - 40352560
Alignment:
Q  54 tcaattctatcaaaatcaattctcaccaccgctataccaaacacacacta 103  Q
    ||||||||||||||||||||||||  ||||||   |||||||||||||||    
T  40352511 tcaattctatcaaaatcaattctcctcaccgcacaaccaaacacacacta 40352560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 102
Target Start/End: Complemental strand, 291744 - 291704
Alignment:
Q  62 atcaaaatcaattctcaccaccgctataccaaacacacact 102  Q
    |||||||||||||||| ||||| | ||||||||||||||||    
T  291744 atcaaaatcaattctcgccaccaccataccaaacacacact 291704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 101
Target Start/End: Original strand, 6464727 - 6464775
Alignment:
Q  53 ctcaattctatcaaaatcaattctcaccaccgctataccaaacacacac 101  Q
    ||||||| |||||||||||||||||  |||| |||||||||||| ||||    
T  6464727 ctcaattatatcaaaatcaattctcgtcaccactataccaaacaaacac 6464775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 102
Target Start/End: Complemental strand, 7765289 - 7765241
Alignment:
Q  54 tcaattctatcaaaatcaattctcaccaccgctataccaaacacacact 102  Q
    ||||||||||||||||||||||||  ||||||   ||||||||||||||    
T  7765289 tcaattctatcaaaatcaattctcgtcaccgcataaccaaacacacact 7765241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0381 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0381
Description:

Target: scaffold0381; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 53 - 103
Target Start/End: Original strand, 9206 - 9256
Alignment:
Q  53 ctcaattctatcaaaatcaattctcaccaccgctataccaaacacacacta 103  Q
    ||||||||||||||||||||||||||||||||| |||||||||||| ||||    
T  9206 ctcaattctatcaaaatcaattctcaccaccgccataccaaacacatacta 9256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 54 - 101
Target Start/End: Original strand, 41715775 - 41715822
Alignment:
Q  54 tcaattctatcaaaatcaattctcaccaccgctataccaaacacacac 101  Q
    |||||||||||||||||||||||| ||||||| |||||||||||||||    
T  41715775 tcaattctatcaaaatcaattctcgccaccgccataccaaacacacac 41715822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 53 - 103
Target Start/End: Complemental strand, 3622452 - 3622402
Alignment:
Q  53 ctcaattctatcaaaatcaattctcaccaccgctataccaaacacacacta 103  Q
    ||||||||||||||||||||||||| ||||||| ||| |||||||||||||    
T  3622452 ctcaattctatcaaaatcaattctcgccaccgccataacaaacacacacta 3622402  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 53 - 103
Target Start/End: Complemental strand, 10371950 - 10371900
Alignment:
Q  53 ctcaattctatcaaaatcaattctcaccaccgctataccaaacacacacta 103  Q
    ||||||||||||||||||||||||| |||||| | ||||||||||||||||    
T  10371950 ctcaattctatcaaaatcaattctccccaccgttttaccaaacacacacta 10371900  T

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Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 53 - 103
Target Start/End: Original strand, 37562687 - 37562737
Alignment:
Q  53 ctcaattctatcaaaatcaattctcaccaccgctataccaaacacacacta 103  Q
    ||||||||||||||||||||||||| ||||||| | |||||||||||||||    
T  37562687 ctcaattctatcaaaatcaattctccccaccgccaaaccaaacacacacta 37562737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 53 - 103
Target Start/End: Original strand, 37639547 - 37639597
Alignment:
Q  53 ctcaattctatcaaaatcaattctcaccaccgctataccaaacacacacta 103  Q
    ||||||||||||||||||||||||| || |||| |||||||||||||||||    
T  37639547 ctcaattctatcaaaatcaattctccccgccgccataccaaacacacacta 37639597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 53 - 102
Target Start/End: Original strand, 48459827 - 48459876
Alignment:
Q  53 ctcaattctatcaaaatcaattctcaccaccgctataccaaacacacact 102  Q
    ||||||||||||||||||||||||||||| ||  ||||||||||||||||    
T  48459827 ctcaattctatcaaaatcaattctcaccaacgtcataccaaacacacact 48459876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 53 - 101
Target Start/End: Original strand, 19097514 - 19097562
Alignment:
Q  53 ctcaattctatcaaaatcaattctcaccaccgctataccaaacacacac 101  Q
    ||||||||||||||||| |||||||||| |||| |||||||||||||||    
T  19097514 ctcaattctatcaaaattaattctcaccgccgccataccaaacacacac 19097562  T

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Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 103
Target Start/End: Original strand, 39977672 - 39977719
Alignment:
Q  56 aattctatcaaaatcaattctcaccaccgctataccaaacacacacta 103  Q
    ||||||||||||||||||| || ||||||| |||||||||||||||||    
T  39977672 aattctatcaaaatcaattatcgccaccgccataccaaacacacacta 39977719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 53 - 99
Target Start/End: Complemental strand, 43631688 - 43631642
Alignment:
Q  53 ctcaattctatcaaaatcaattctcaccaccgctataccaaacacac 99  Q
    |||||||||||||||||||||| || ||||||| |||||||||||||    
T  43631688 ctcaattctatcaaaatcaattatccccaccgccataccaaacacac 43631642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 102
Target Start/End: Original strand, 34010456 - 34010504
Alignment:
Q  53 ctcaattctatcaaaatcaattctcaccaccgctataccaaacacacact 102  Q
    ||||||||||||||||||||||||| ||||||| | ||||||||||||||    
T  34010456 ctcaattctatcaaaatcaattctcgccaccgcca-accaaacacacact 34010504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 61 - 106
Target Start/End: Complemental strand, 34365966 - 34365921
Alignment:
Q  61 tatcaaaatcaattctcaccaccgctataccaaacacacactacat 106  Q
    ||||||||||||||||  ||||||| ||||||||||||||||||||    
T  34365966 tatcaaaatcaattctagccaccgccataccaaacacacactacat 34365921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 54 - 99
Target Start/End: Complemental strand, 39391128 - 39391083
Alignment:
Q  54 tcaattctatcaaaatcaattctcaccaccgctataccaaacacac 99  Q
    ||||||||||||||||||||| || ||||||| |||||||||||||    
T  39391128 tcaattctatcaaaatcaattttcgccaccgccataccaaacacac 39391083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 101
Target Start/End: Original strand, 3342907 - 3342955
Alignment:
Q  53 ctcaattctatcaaaatcaattctcaccaccgctataccaaacacacac 101  Q
    ||||||||||||||||| ||||||| ||||||| | |||||||||||||    
T  3342907 ctcaattctatcaaaattaattctccccaccgccaaaccaaacacacac 3342955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 102
Target Start/End: Original strand, 32187060 - 32187106
Alignment:
Q  56 aattctatcaaaatcaattctcaccaccgctataccaaacacacact 102  Q
    |||||||||||||||||||||| ||||||  |||||||||| |||||    
T  32187060 aattctatcaaaatcaattctcgccaccgtcataccaaacatacact 32187106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 100
Target Start/End: Original strand, 38230186 - 38230232
Alignment:
Q  54 tcaattctatcaaaatcaattctcaccaccgctataccaaacacaca 100  Q
    |||||||||||||||||||||||| |  |||| ||||||||||||||    
T  38230186 tcaattctatcaaaatcaattctctcggccgccataccaaacacaca 38230232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 106
Target Start/End: Original strand, 3375607 - 3375660
Alignment:
Q  53 ctcaattctatcaaaatcaattctcaccaccgctataccaaacacacactacat 106  Q
    ||||||||||||||||||||||||| ||| | |  ||||||||||| |||||||    
T  3375607 ctcaattctatcaaaatcaattctctccatcaccgtaccaaacacatactacat 3375660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 56 - 97
Target Start/End: Complemental strand, 12632072 - 12632031
Alignment:
Q  56 aattctatcaaaatcaattctcaccaccgctataccaaacac 97  Q
    |||||||||||||||||||||| ||||||| | |||||||||    
T  12632072 aattctatcaaaatcaattctctccaccgcgaaaccaaacac 12632031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 98
Target Start/End: Original strand, 46541717 - 46541762
Alignment:
Q  53 ctcaattctatcaaaatcaattctcaccaccgctataccaaacaca 98  Q
    |||||||||||||||||||||| | |||||||| | ||||||||||    
T  46541717 ctcaattctatcaaaatcaattttaaccaccgccaaaccaaacaca 46541762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 100
Target Start/End: Original strand, 9456224 - 9456268
Alignment:
Q  56 aattctatcaaaatcaattctcaccaccgctataccaaacacaca 100  Q
    |||||||||||||||||||||||| |||||  ||||||| |||||    
T  9456224 aattctatcaaaatcaattctcactaccgccgtaccaaagacaca 9456268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0369 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0369
Description:

Target: scaffold0369; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 102
Target Start/End: Original strand, 8545 - 8594
Alignment:
Q  53 ctcaattctatcaaaatcaattctcaccaccgctataccaaacacacact 102  Q
    |||||||||||||||||||||| |  ||||||| ||||||||||||||||    
T  8545 ctcaattctatcaaaatcaattattcccaccgccataccaaacacacact 8594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0394 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0394
Description:

Target: scaffold0394; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 103
Target Start/End: Complemental strand, 5835 - 5785
Alignment:
Q  53 ctcaattctatcaaaatcaattctcaccaccgctataccaaacacacacta 103  Q
    ||||||| ||||||||||||||||| | ||| | |||||||||||||||||    
T  5835 ctcaattatatcaaaatcaattctccctaccaccataccaaacacacacta 5785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 103
Target Start/End: Original strand, 253224 - 253274
Alignment:
Q  53 ctcaattctatcaaaatcaattctcaccaccgctataccaaacacacacta 103  Q
    ||||||||||||||||||||||||| || ||||   |||||||||||||||    
T  253224 ctcaattctatcaaaatcaattctctccgccgcccaaccaaacacacacta 253274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0983 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0983
Description:

Target: scaffold0983; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 101
Target Start/End: Complemental strand, 2273 - 2225
Alignment:
Q  53 ctcaattctatcaaaatcaattctcaccaccgctataccaaacacacac 101  Q
    ||||||||| |||||||||||| || ||||||| |||||||||| ||||    
T  2273 ctcaattctgtcaaaatcaattttcgccaccgccataccaaacagacac 2225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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