View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3025_high_29 (Length: 210)
Name: NF3025_high_29
Description: NF3025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3025_high_29 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 42153294 - 42153083
Alignment:
| Q |
1 |
ttagccacaccataccactccaaaaaatgtagtttacgtagcttaattttataatctgttatgattttcttgtctaattaaagaaaagttgttagagtaa |
100 |
Q |
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| T |
42153294 |
ttagccacaccataccactccaaaaaatgtagtttacgtagcttaattttataatctgttatgattttcttgtctaattaaagaaaatttgttagagtaa |
42153195 |
T |
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| Q |
101 |
aattgtgtttaattaagaataaggttacttacatatacactccttgtgtgcttgtaagttccgtaactatataaccttatag--gtggcgtcacctaagt |
198 |
Q |
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| T |
42153194 |
agttgtgtttaattaagaataaggttacttacatatacactccttgtgtgcttgtaagttccgtaactatataaccttataggtgtggcgtcacctaagt |
42153095 |
T |
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| Q |
199 |
ttacacatcccc |
210 |
Q |
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|||||||||||| |
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| T |
42153094 |
ttacacatcccc |
42153083 |
T |
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