View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3025_high_3 (Length: 567)
Name: NF3025_high_3
Description: NF3025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3025_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 16 - 549
Target Start/End: Original strand, 10068608 - 10069142
Alignment:
| Q |
16 |
atgaggtttaatagtagagatgcaaaattca---tgcaaaggcaacgatcatggccgctattacctgaagtaactccagctcaactagttgtatttatcc |
112 |
Q |
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| T |
10068608 |
atgaggtttaatagtagagatgcaaaattcacactgcaaaggcaacgatcatgcccactattaccttaagttactcgagctcatctagttgtagttatcc |
10068707 |
T |
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| Q |
113 |
atcctttcaggaactaaagattgtggaaaacttcatggtgtctgcaaaggctaggaaaatgtctcattatagaggttgactggcataaacctattgttgg |
212 |
Q |
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| T |
10068708 |
atcctttcaggaactaaagattgtggaaaacttgatggtgtatgccaagcctaggaaaatgtctcactattgaggtgaactggcaaaaacctatagttgg |
10068807 |
T |
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| Q |
213 |
caggaataaaatcaacattgatggagcttcgactggtaatccttttcgagctgcggatggtgttatcttcaaggacttgagcaacttttgtcacttgttt |
312 |
Q |
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| T |
10068808 |
ctggaa-aaaatcaacgttgatggagcttcaattggtaatcattgtcgagctgcggttggtgttatcttcaaggactgaagcaacttttgtcacttgttt |
10068906 |
T |
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| Q |
313 |
ttcaatgaacattggaaatcaaaagctttatatgcagaatttagtgcaattatcaatgctctcaagaaagcaaagatgaatgttctttgggggcctaaaa |
412 |
Q |
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| T |
10068907 |
ttcaatgaacattggaaatcaaaagctttatatgcagaatttagttcaattatcaatgctctcaagaaagcaaagatgaatgttctttagggtcc-aata |
10069005 |
T |
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| Q |
413 |
aatagatggatcaattg-ctccaattcatcgagactaatcaattcaaatgcagtcgcgtttttagggaaggaaagcaagtgttgagaagcttgctagcta |
511 |
Q |
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| T |
10069006 |
aatagatggatcaattgactccaattcatcaagactattcaattcaaatgcagtcgcatatttagggaagg-aagcaagtgttgagaagcttgctagcta |
10069104 |
T |
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| Q |
512 |
tggccacaccattcatgatatagaatggtggagtattt |
549 |
Q |
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| T |
10069105 |
tggccacatcattcatgatatagaatggtggactattt |
10069142 |
T |
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