View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3025_high_4 (Length: 523)
Name: NF3025_high_4
Description: NF3025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3025_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 392; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 15 - 506
Target Start/End: Original strand, 684767 - 685258
Alignment:
| Q |
15 |
aacagtaggaagctagttaggtatggtcgcatgacacaatgtgataatgatattttcttttttatccttcatttgagaaaagagatattttttggctcag |
114 |
Q |
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| T |
684767 |
aacagtaggaagctaattaggtatggtcgcataacacaatgtgataatgatattttcttttttatccttcatttgagaaaagagatattttttggctcag |
684866 |
T |
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| Q |
115 |
atttgagaaatgagttnnnnnnnnnnnngaatccatcactgcttgatcacagcactagacatatatcttttggcaatcatagtttggttagtaatcgttg |
214 |
Q |
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| T |
684867 |
atttgagaaaagagttaaaaacaaaaaagaatccatcactgtttgatcacagcactagacatatatcttttggcaatcatagtttggttagtaatcattg |
684966 |
T |
|
| Q |
215 |
tcaaagtccctttagtctatagaacttcagtttattttctctaaaggactagctataacaaactcctcaggaaatccatagcttgtcggaaacgctaaca |
314 |
Q |
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| T |
684967 |
tcaaagtccctttagtctattgaacttcagtttatttgcactaaaggactagctataacaaactcctcaggaaatccatagcttgtcagaaacgcttaca |
685066 |
T |
|
| Q |
315 |
atgtgtccaatttctatggaaattaagtttttgatattttaatgattaactggcatcgccattttttgcgtacaccattgtcaactttttctgatcgtaa |
414 |
Q |
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| T |
685067 |
atgtgtccaatttctatggaaattaagtttttgatattttaatgattaactggcatcaccattttttgcatacaccattgtcaacttattctgatcgtaa |
685166 |
T |
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| Q |
415 |
atagaagtattgataaatacatacttgatttgtattgtctacttattttgattggtaggtttcttatactgacgcaatccatcgtcacttgt |
506 |
Q |
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| T |
685167 |
atagaagtattgataaatacatacttgatttgtattgtctacttattttgattggttggtttattatactgacgcaacccatcgtcacttgt |
685258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 314 - 354
Target Start/End: Original strand, 647806 - 647846
Alignment:
| Q |
314 |
aatgtgtccaatttctatggaaattaagtttttgatatttt |
354 |
Q |
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||||| |||||||||||||||||||||||| ||||| |||| |
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| T |
647806 |
aatgtttccaatttctatggaaattaagttgttgatttttt |
647846 |
T |
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