View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3025_high_7 (Length: 492)
Name: NF3025_high_7
Description: NF3025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3025_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 390; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 65 - 479
Target Start/End: Complemental strand, 30805197 - 30804783
Alignment:
| Q |
65 |
atatattcatggtactacatgcaatttgaagtacacacccacttgaaaattgaaagtaagtatggcaaatgtgatgaataggtagcaatagcattggaaa |
164 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30805197 |
atatattcatggtactacatgcaatttgaagtacacacccacttgaaaattgaaagtaagtatggcaaatgtgatgaataggtagcaatagcattggaaa |
30805098 |
T |
|
| Q |
165 |
actgcatnnnnnnntacgtggcatagttattagctaaaagtttgattctgcatgacacgcgcaaggcatgccctagatagattttgtgctgttttctgca |
264 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30805097 |
actgcataaaaaaatacgtggcatagttattagctaaaagtttgattctgcatgacacgcgcaaggcatgccctagatagattttgtgctgttttctgca |
30804998 |
T |
|
| Q |
265 |
acaaaaatattgatattcattagtaaccgttctatgaatcaactcaaacttcagcatatggcaacttcaccactatgcaccaaattcattcatcactttt |
364 |
Q |
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| T |
30804997 |
acaaaaatattgatattcattagtaaccgttctatgaatcaactcaaacttcagcatatggcaacttcaccactatgcaccaaattcattcatcactttt |
30804898 |
T |
|
| Q |
365 |
acttcacagacacgtgcttgcttcctgaataaagtaagcatatactcaaaaaatatcatgcaaaaccacttactataaacaacaaaaaccagatttctat |
464 |
Q |
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| T |
30804897 |
acttcccagacacgtgcttgcttcctgaataaagtaagcatatactcaaaaaatatcatgcaaaaccacttactataaacaacaaaaaccagatttctat |
30804798 |
T |
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| Q |
465 |
accttgtgccttttg |
479 |
Q |
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| T |
30804797 |
accttgtgccttttg |
30804783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 10 - 479
Target Start/End: Complemental strand, 30817020 - 30816553
Alignment:
| Q |
10 |
atgaatagaacaagacaaaaatatctgatatgtatatatcaaactcttaatataaatatattcatggtactacatgcaatttgaagtacacacccacttg |
109 |
Q |
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||||| |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |
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| T |
30817020 |
atgaaaagaaaaagacaaaaatatctgatatgtatat--caaactcttaatataaatatattcatggtactgcatgcaatttgaagtacacacgcacttg |
30816923 |
T |
|
| Q |
110 |
aaaattgaaagtaagtatggcaaatgtgatgaataggtagcaatagcattggaaaactgcatnnnnnnntacgtggcatagttattagctaaaagtttga |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| ||||||| |
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| T |
30816922 |
aaaattgaaagtaagtatggcaaatgtgatgaataggtagcaatagcattgaaaaactgcataaaaaaatacgtggcatagttattagctaagagtttga |
30816823 |
T |
|
| Q |
210 |
ttctgcatgacacgcgcaaggcatgccctagatagattttgtgctgttttctgcaacaaaaatattgatattcattagtaaccgttctatgaatcaactc |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |
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| T |
30816822 |
ttctgcatgacacgcgcaaggcatgccctagatagattttgtgctgttttctgcaacaaaaatattgagtttcagtagtaaccgttctatgaatcaactc |
30816723 |
T |
|
| Q |
310 |
aaacttcagcatatggcaacttcaccactatgcaccaaattcattcatcacttttacttcacagacacgtgcttgcttcctgaataaagtaagcatatac |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
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| T |
30816722 |
aaacttcagcatatggcaacttcaccactatgcaccaaattcattcatcacttttacttcacagacacgtgcttgcttcctgaataaaatatacatatac |
30816623 |
T |
|
| Q |
410 |
tcaaaaaatatcatgcaaaaccacttactataaacaacaaaaaccagatttctataccttgtgccttttg |
479 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30816622 |
tcaaacaatatcatgcaaaaccacttactataaacaacaaaaaccagatttctataccttgtgccttttg |
30816553 |
T |
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