View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3025_high_8 (Length: 475)

Name: NF3025_high_8
Description: NF3025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3025_high_8
NF3025_high_8
[»] chr3 (2 HSPs)
chr3 (10-460)||(44477930-44478380)
chr3 (166-436)||(34584692-34584962)
[»] chr5 (1 HSPs)
chr5 (10-460)||(21975798-21976248)
[»] chr7 (4 HSPs)
chr7 (119-338)||(47735013-47735232)
chr7 (211-413)||(13048059-13048261)
chr7 (211-431)||(34797383-34797603)
chr7 (352-432)||(37875643-37875723)
[»] chr4 (2 HSPs)
chr4 (119-338)||(35598474-35598693)
chr4 (364-434)||(17323260-17323330)
[»] chr8 (3 HSPs)
chr8 (37-338)||(41771489-41771790)
chr8 (352-434)||(1379763-1379845)
chr8 (280-437)||(17130025-17130182)
[»] chr2 (2 HSPs)
chr2 (119-433)||(13649870-13650181)
chr2 (280-432)||(20653593-20653745)
[»] chr6 (1 HSPs)
chr6 (211-431)||(22370815-22371035)
[»] chr1 (1 HSPs)
chr1 (166-252)||(30964578-30964664)


Alignment Details
Target: chr3 (Bit Score: 419; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 10 - 460
Target Start/End: Original strand, 44477930 - 44478380
Alignment:
10 aagaatatggcaaaagaaatcattgaaggtgatgctaagaaacaatatactctgctttggaggtatgctgctgagttgcacagagtttcattgggaaata 109  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
44477930 aagaaaatggctaaagaaatcattgaaggtgatgctaagaaacaatatactctgctttggaggtatgctgctgagttgcacagagtttcattgggaaata 44478029  T
110 ccctcaaaattaatgtggagagaacactgttaacaaatcaaccaaggttcaacaagttttatttctgctttgaaggttgtaaaaaaggatttttgagtgg 209  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
44478030 ccctcaagattaatgtggagagaacactgttaacaaatcaaccaaggttcaacaagttttatttctgttttgaaggttgtaaaaaaggatttttgagtgg 44478129  T
210 atgtaggcctttcattggagtggatggatgccatctgaaaacaatgtatggaggaatactactggttgctgttggaagagatgcaaatgatcagtattac 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
44478130 atgtaggcctttcattggagtggatggatgccatctgaaaacaatgtatggaggaatactactggttgctgttggaagagatgcaaatgatcagtattac 44478229  T
310 ccattggcttttggagtggttgagaatgagactaatgatgcttggagatggttcttgacattgctacttaatgatattggcactgataggagatgggtct 409  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
44478230 ccattggcttttggagtggttgagaatgagactaatgaagcttggagatggttcttgacattgctacttaatgatattggcactgacaggagatgggtct 44478329  T
410 ttatatcagaccaacaaaaggtaaataatttatgttttgagactaatttgt 460  Q
    ||||| ||||||||||||||||||||| |||||||||||||||||||||||    
44478330 ttataacagaccaacaaaaggtaaatagtttatgttttgagactaatttgt 44478380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 166 - 436
Target Start/End: Original strand, 34584692 - 34584962
Alignment:
166 ttttatttctgctttgaaggttgtaaaaaaggatttttgagtggatgtaggcctttcattggagtggatggatgccatctgaaaacaatgtatggaggaa 265  Q
    |||||||| |||||||||||||||||| |||| || |||| ||| ||||| || ||||| || || |||||||| ||| ||||||||   ||||| ||      
34584692 ttttatttttgctttgaaggttgtaaacaagggttcttgaatggttgtagacccttcataggtgtagatggatgtcatttgaaaacacaatatggcgggc 34584791  T
266 tactactggttgctgttggaagagatgcaaatgatcagtattacccattggcttttggagtggttgagaatgagactaatgatgcttggagatggttctt 365  Q
     ||| ||| | ||||| ||||||||||| ||||| || ||||| ||  | ||||||||| | |||||   ||||| || |||  | ||||| ||||| ||    
34584792 aacttctgatagctgtgggaagagatgctaatgaccaatattatcctcttgcttttggaattgttgaagttgagaatactgaatcatggaggtggttttt 34584891  T
366 gacattgctacttaatgatattggcactgataggagatgggtctttatatcagaccaacaaaaggtaaata 436  Q
     ||  |  ||||  | |||||||| ||||| | ||||||||| |||||||| || ||||||||||||||||    
34584892 aactcttttactagaggatattggaactgagaagagatgggtatttatatctgatcaacaaaaggtaaata 34584962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 10 - 460
Target Start/End: Complemental strand, 21976248 - 21975798
Alignment:
10 aagaatatggcaaaagaaatcattgaaggtgatgctaagaaacaatatactctgctttggaggtatgctgctgagttgcacagagtttcattgggaaata 109  Q
    ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
21976248 aagaaaatggctaaagaaatcattgaaggtgatgctaagaaacaatatactctgctttggaggtatactgctgagttgcacagagtttcattgggaaata 21976149  T
110 ccctcaaaattaatgtggagagaacactgttaacaaatcaaccaaggttcaacaagttttatttctgctttgaaggttgtaaaaaaggatttttgagtgg 209  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
21976148 ccctcaagattaatgtggagagaacactgttaacaaatcaaccaaggttcaacaagttttatttctgttttgaaggttgtaaaaaaggatttttgagtgg 21976049  T
210 atgtaggcctttcattggagtggatggatgccatctgaaaacaatgtatggaggaatactactggttgctgttggaagagatgcaaatgatcagtattac 309  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
21976048 atgtaggcctttcattggagtggatggatgccatctgaaaacaatgtatggaggaatactactggttgttgttggaagagatgcaaatgatcagtattac 21975949  T
310 ccattggcttttggagtggttgagaatgagactaatgatgcttggagatggttcttgacattgctacttaatgatattggcactgataggagatgggtct 409  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
21975948 ccattggcttttggagtggttgagaatgagactaatgaagcttggagatggttcttgacattgctacttaatgatattggcactgacaggagatgggtct 21975849  T
410 ttatatcagaccaacaaaaggtaaataatttatgttttgagactaatttgt 460  Q
    ||||| ||||||||||||||||||||| |||||||||||||||||||||||    
21975848 ttataacagaccaacaaaaggtaaatagtttatgttttgagactaatttgt 21975798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 1e-32; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 119 - 338
Target Start/End: Original strand, 47735013 - 47735232
Alignment:
119 ttaatgtggagagaacactgttaacaaatcaaccaaggttcaacaagttttatttctgctttgaaggttgtaaaaaaggatttttgagtggatgtaggcc 218  Q
    ||||||| ||||||||  || |||||||||||||||| |||| ||||||||| || || ||||| ||||| ||  |||| ||||||  ||| ||||||||    
47735013 ttaatgttgagagaaccttgataacaaatcaaccaagattcagcaagttttacttttgttttgatggttgcaagcaaggttttttggctggttgtaggcc 47735112  T
219 tttcattggagtggatggatgccatctgaaaacaatgtatggaggaatactactggttgctgttggaagagatgcaaatgatcagtattacccattggct 318  Q
     || |||||||||||||| || ||  ||||||| | || |||||| ||| || | |||| ||||||||||||||||||||| || |||| |||||| ||     
47735113 atttattggagtggatgggtgtcacttgaaaactaagtttggaggtatattattagttgatgttggaagagatgcaaatgaccaatatttcccattagca 47735212  T
319 tttggagtggttgagaatga 338  Q
    |||||||| |||||||||||    
47735213 tttggagttgttgagaatga 47735232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 211 - 413
Target Start/End: Complemental strand, 13048261 - 13048059
Alignment:
211 tgtaggcctttcattggagtggatggatgccatctgaaaacaatgtatggaggaatactactggttgctgttggaagagatgcaaatgatcagtattacc 310  Q
    |||||||| ||||| || |||||||| || |||||||||||    |||||||| ||  || ||||||| ||||| |||||||||||||| || || | ||    
13048261 tgtaggccattcataggggtggatgggtgtcatctgaaaacccaatatggaggtattttattggttgcagttggtagagatgcaaatgaccaatacttcc 13048162  T
311 cattggcttttggagtggttgagaatgagactaatgatgcttggagatggttcttgacattgctacttaatgatattggcactgataggagatgggtctt 410  Q
    |  ||||||||||||| || |||| |||||| |   || ||||||| |||||| | || || || ||| | |||||||| ||| | ||||||||||| ||    
13048161 ctctggcttttggagttgtagagactgagacaacatattcttggaggtggttccttaccttactgcttgaagatattggaactaacaggagatgggtgtt 13048062  T
411 tat 413  Q
    |||    
13048061 tat 13048059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 211 - 431
Target Start/End: Complemental strand, 34797603 - 34797383
Alignment:
211 tgtaggcctttcattggagtggatggatgccatctgaaaacaatgtatggaggaatactactggttgctgttggaagagatgcaaatgatcagtattacc 310  Q
    |||||| | ||||| || |||||||| || |||||||||||    | |||||| ||  || ||||||| ||||| |||||||||||||| || || |  |    
34797603 tgtaggtcattcataggggtggatgggtgtcatctgaaaacccaatttggaggtattttattggttgcagttggtagagatgcaaatgaccaatactttc 34797504  T
311 cattggcttttggagtggttgagaatgagactaatgatgcttggagatggttcttgacattgctacttaatgatattggcactgataggagatgggtctt 410  Q
    | |||||||||||||| || |||| ||| || |  ||| | ||||| |||||| | || || || ||| | |||||||| ||| ||||||||||||| ||    
34797503 ctttggcttttggagttgtagagactgaaacaacagattcatggaggtggttccttaccttactgcttgaagatattggaactaataggagatgggtatt 34797404  T
411 tatatcagaccaacaaaaggt 431  Q
    ||| || || |||||||||||    
34797403 tatttctgatcaacaaaaggt 34797383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 352 - 432
Target Start/End: Original strand, 37875643 - 37875723
Alignment:
352 tggagatggttcttgacattgctacttaatgatattggcactgataggagatgggtctttatatcagaccaacaaaaggta 432  Q
    |||||||||||||| ||| || ||||| | ||||| || ||||| |||| |||||| || || ||||| ||||||||||||    
37875643 tggagatggttcttaacactgttacttgaagatatagggactgagaggaaatgggttttcatttcagatcaacaaaaggta 37875723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 119 - 338
Target Start/End: Original strand, 35598474 - 35598693
Alignment:
119 ttaatgtggagagaacactgttaacaaatcaaccaaggttcaacaagttttatttctgctttgaaggttgtaaaaaaggatttttgagtggatgtaggcc 218  Q
    ||||||| ||||||||  ||||||||||||||| ||| |||| ||||||||| || || ||||| ||||| ||  |||| ||||||  ||| ||||||||    
35598474 ttaatgttgagagaaccttgttaacaaatcaacaaagattcagcaagttttacttttgttttgatggttgcaagcaaggttttttggctggttgtaggcc 35598573  T
219 tttcattggagtggatggatgccatctgaaaacaatgtatggaggaatactactggttgctgttggaagagatgcaaatgatcagtattacccattggct 318  Q
     || |||||||||||||| || ||  ||||||| | || |||||| ||| || | |||| ||||||||||||||||||||| || |||| |||||| ||     
35598574 atttattggagtggatgggtgtcacttgaaaactaagtttggaggtatattattagttgatgttggaagagatgcaaatgaccaatatttcccattagca 35598673  T
319 tttggagtggttgagaatga 338  Q
    |||||||| |||||||||||    
35598674 tttggagttgttgagaatga 35598693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 364 - 434
Target Start/End: Original strand, 17323260 - 17323330
Alignment:
364 ttgacattgctacttaatgatattggcactgataggagatgggtctttatatcagaccaacaaaaggtaaa 434  Q
    ||||| ||| ||||| |||||||||| ||||| | ||||||||||||||| ||||| ||||||||||||||    
17323260 ttgaccttgttacttgatgatattggtactgagaagagatgggtctttatttcagatcaacaaaaggtaaa 17323330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 71; Significance: 6e-32; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 37 - 338
Target Start/End: Complemental strand, 41771790 - 41771489
Alignment:
37 ggtgatgctaagaaacaatatactctgctttggaggtatgctgctgagttgcacagagtttc-attgggaaataccctcaaaattaatgtggagagaaca 135  Q
    |||||||| ||||||||||| ||||| || ||||||||||| ||||||||  | || || |  | |||||| ||  |||||  ||||||| || |||||     
41771790 ggtgatgcaaagaaacaatacactctactatggaggtatgcagctgagttaaagagggtgtgtaatgggaa-taatctcaagcttaatgttgaaagaact 41771692  T
136 ctgttaacaaatcaaccaaggttcaacaagttttatttctgctttgaaggttgtaaaaaaggatttttgagtggatgtaggcctttcattggagtggatg 235  Q
     ||||||| ||||||||||| |||| ||||||||| || || ||||| ||||| ||  |||| ||||||  ||| |||||||| || |||||||||||||    
41771691 ttgttaaccaatcaaccaagattcagcaagttttacttttgttttgatggttgcaagcaaggttttttggctggctgtaggccatttattggagtggatg 41771592  T
236 gatgccatctgaaaacaatgtatggaggaatactactggttgctgttggaagagatgcaaatgatcagtattacccattggcttttggagtggttgagaa 335  Q
    | || ||  ||||||| | || |||||| ||| || | |||| ||||||||||||||||||||| || |||| |||||| || |||||||| ||||||||    
41771591 ggtgtcacttgaaaactaagtttggaggtatattattagttgatgttggaagagatgcaaatgaccaatatttcccattagcatttggagttgttgagaa 41771492  T
336 tga 338  Q
    |||    
41771491 tga 41771489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 352 - 434
Target Start/End: Complemental strand, 1379845 - 1379763
Alignment:
352 tggagatggttcttgacattgctacttaatgatattggcactgataggagatgggtctttatatcagaccaacaaaaggtaaa 434  Q
    ||||| ||||| |||||  || ||||| |||||||||| ||||| | ||||||||||||||| ||||| ||||||||||||||    
1379845 tggaggtggtttttgaccctgttacttgatgatattggtactgagaagagatgggtctttatttcagatcaacaaaaggtaaa 1379763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 280 - 437
Target Start/End: Complemental strand, 17130182 - 17130025
Alignment:
280 gttggaagagatgcaaatgatcagtattacccattggcttttggagtggttgagaatgagactaatgatgcttggagatggttcttgacattgctactta 379  Q
    ||||| || ||||||||||| || |||||||| || |||||||| || |||||    |||| ||| ||  |||||||||||||  | ||| |  |||||     
17130182 gttgggagggatgcaaatgaccaatattaccctttagcttttggggtagttgaagtggagaataaggaatcttggagatggtttctaacacttttacttg 17130083  T
380 atgatattggcactgataggagatgggtctttatatcagaccaacaaaaggtaaataa 437  Q
    | |||||||| ||||||| |||||||||||| || || || |||||||||||| ||||    
17130082 aagatattggaactgataagagatgggtcttcatctctgatcaacaaaaggtacataa 17130025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 5e-26; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 119 - 433
Target Start/End: Complemental strand, 13650181 - 13649870
Alignment:
119 ttaatgtggagagaacactgttaacaaatcaaccaaggttcaacaagttttatttctgctttgaaggttgtaaaaaaggatttttgagtggatgtaggcc 218  Q
    ||||||| ||||||||  || |||||||||||||||| || | ||||||||| || |  ||| | ||||| ||  |||| ||||||  ||| ||||||||    
13650181 ttaatgttgagagaaccttgataacaaatcaaccaagatttagcaagttttacttttttttttatggttgcaagcaaggttttttggctggctgtaggcc 13650082  T
219 tttcattggagtggatggatgccatctgaaaacaatgtatggaggaatactactggttgctgttggaagagatgcaaatgatcagtattacccattggct 318  Q
     || |||||||||||||| || ||  ||||||| | || |||| | ||| || | |||||||||||||||||||||||||| || |||| |||||| ||     
13650081 atttattggagtggatgggtgtcacttgaaaactaagtttggatgtatattattagttgctgttggaagagatgcaaatgaccaatatttcccattagca 13649982  T
319 tttggagtggttgagaatgagactaatgatgcttggagatggttcttgacattgctacttaatgatattggcactgataggagatgggtctttatatcag 418  Q
    |||||||| ||||||||||| || || ||  ||||||| ||||| || || || || ||| | |||||||| |   | |  |||||||| ||||| ||||    
13649981 tttggagttgttgagaatgaaaccaaagagacttggaggtggtttttaactttactgcttgaagatattggaa---acaaaagatgggtgtttatttcag 13649885  T
419 accaacaaaaggtaa 433  Q
    | |||||||||||||    
13649884 atcaacaaaaggtaa 13649870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 280 - 432
Target Start/End: Original strand, 20653593 - 20653745
Alignment:
280 gttggaagagatgcaaatgatcagtattacccattggcttttggagtggttgagaatgagactaatgatgcttggagatggttcttgacattgctactta 379  Q
    ||||| || ||||||||||| || |||||||| || |||||||| || |||||    |||| ||| ||  |||||||||||||  ||||| || |||||     
20653593 gttggtagggatgcaaatgaccaatattaccctttagcttttggggttgttgaagtggagaataaggaatcttggagatggtttctgacactgttacttg 20653692  T
380 atgatattggcactgataggagatgggtctttatatcagaccaacaaaaggta 432  Q
    | ||||||||  |||||| |||||||||||| || || || ||||||||||||    
20653693 aagatattggagctgataagagatgggtcttcatctctgatcaacaaaaggta 20653745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 211 - 431
Target Start/End: Complemental strand, 22371035 - 22370815
Alignment:
211 tgtaggcctttcattggagtggatggatgccatctgaaaacaatgtatggaggaatactactggttgctgttggaagagatgcaaatgatcagtattacc 310  Q
    |||||||| ||||| || |||||||| || ||| |||||||    |||||||| ||  || ||||||| || || |||||||||||||| || |||| ||    
22371035 tgtaggccattcataggggtggatggttgtcatttgaaaacccaatatggaggtattttattggttgcagtgggtagagatgcaaatgaccaatatttcc 22370936  T
311 cattggcttttggagtggttgagaatgagactaatgatgcttggagatggttcttgacattgctacttaatgatattggcactgataggagatgggtctt 410  Q
    | |||||||||||||| || |||| |||||| |  ||| ||||||| |||||| | || || || ||| | |||||||| ||| ||||||||||||| ||    
22370935 ctttggcttttggagttgtagagactgagacaacagattcttggaggtggttccttaccttactgcttgaagatattggaactaataggagatgggtatt 22370836  T
411 tatatcagaccaacaaaaggt 431  Q
    ||| || ||||||||||||||    
22370835 tatctctgaccaacaaaaggt 22370815  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 166 - 252
Target Start/End: Original strand, 30964578 - 30964664
Alignment:
166 ttttatttctgctttgaaggttgtaaaaaaggatttttgagtggatgtaggcctttcattggagtggatggatgccatctgaaaaca 252  Q
    |||||||| |||||||||||||||||| |||| || |||| ||| ||||| || ||||| || || |||||||| ||| ||||||||    
30964578 ttttatttttgctttgaaggttgtaaacaagggttcttgaatggttgtagacccttcataggtgtagatggatgtcatttgaaaaca 30964664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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