View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3025_low_1 (Length: 712)

Name: NF3025_low_1
Description: NF3025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3025_low_1
NF3025_low_1
[»] chr1 (3 HSPs)
chr1 (199-444)||(33443895-33444140)
chr1 (524-696)||(33443724-33443896)
chr1 (12-132)||(33444207-33444327)
[»] chr8 (6 HSPs)
chr8 (426-495)||(39560320-39560388)
chr8 (452-501)||(26819281-26819330)
chr8 (452-501)||(29705893-29705942)
chr8 (455-493)||(30011767-30011805)
chr8 (460-497)||(3017486-3017523)
chr8 (452-497)||(26762870-26762915)
[»] chr3 (2 HSPs)
chr3 (26-91)||(2229712-2229777)
chr3 (199-241)||(2229602-2229644)
[»] chr6 (2 HSPs)
chr6 (452-496)||(31650307-31650351)
chr6 (452-501)||(733589-733638)
[»] chr7 (2 HSPs)
chr7 (452-501)||(35169972-35170021)
chr7 (451-497)||(5376311-5376357)
[»] chr5 (4 HSPs)
chr5 (33-120)||(40560964-40561051)
chr5 (426-496)||(16230762-16230827)
chr5 (451-500)||(16962195-16962243)
chr5 (452-501)||(36261995-36262044)
[»] chr4 (1 HSPs)
chr4 (206-291)||(17043090-17043175)
[»] chr2 (1 HSPs)
chr2 (215-336)||(37232767-37232888)


Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-124; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 199 - 444
Target Start/End: Complemental strand, 33444140 - 33443895
Alignment:
Q  199 ggaacaaacctgcaacagaacacgagcaggcatgaaaggaatttcagtttggttttgagaagtgttctcccaatcaataatattttcaacatcattctga 298  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  33444140 ggaacaaacctgcaagagaacacgagcaggcatgaaaggaatttcagtttggttttgagatgtgttctcccaatcaataatattttcaacatcattctga 33444041  T
Q  299 gtcactttgaagttgtcacaattacgtattgcagattctacaagtatccttatggagtatggcagcatctcataaaatgccaagtaaacaatgagcttaa 398  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||    
T  33444040 gtcactttgaagttgtcacaattacgtattgcagattctacaagtatccttatggagtatggcagcctctcttaaaatgccaaataaacaatgagcttaa 33443941  T
Q  399 tttcgaaacaatgtgaagttttaaccgatcacaaccaatcatatat 444  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  33443940 tttcgaaacaatgtgaagttttaaccgatcacaaccaatcatatat 33443895  T

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Target: chr1; HSP #2
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 524 - 696
Target Start/End: Complemental strand, 33443896 - 33443724
Alignment:
Q  524 ataaatccatagacaattcattcatgtatgaaaggttaaatcttagagttcatagttcatacataccaattctagaatcattgagtgaaggcaaactaaa 623  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  33443896 ataaatccatagacaattcattcatgtatgaaaggttaaatcttagagttcatagttcatacataccaattctagaatcattgagtaaaggcaaactaaa 33443797  T
Q  624 aaactttccatattcatcaccacctccaggcttgggaagaccagtcaatattcctttgaacacatgttcagaa 696  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33443796 aaactttccatattcatcaccacctccaggcttgggaagaccagtcaatattcctttgaacacatgttcagaa 33443724  T

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Target: chr1; HSP #3
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 12 - 132
Target Start/End: Complemental strand, 33444327 - 33444207
Alignment:
Q  12 agggctaaccttgttaggatcaccaccaagattcttcatggcatccctcatagaagccaaatcaacaagagcaggaactccagtagcatccttgtcaaca 111  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33444327 agggctaatcttgttaggatcaccaccaagattcttcatggcatccctcatagaagccaaatcaacaagagcaggaactccagtagcatccttgtcaaca 33444228  T
Q  112 caaccaaattaaccttagtac 132  Q
    ||| |||||||||||||||||    
T  33444227 caaacaaattaaccttagtac 33444207  T

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Target: chr8 (Bit Score: 46; Significance: 7e-17; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 426 - 495
Target Start/End: Original strand, 39560320 - 39560388
Alignment:
Q  426 atcacaaccaatcatatatttatatcgactttagaagtagttatgataaaagtcaaacatttttaatgat 495  Q
    ||||||||||| ||||||| | ||| ||||||||||||||||||||| ||||||||||||||||||||||    
T  39560320 atcacaaccaaacatatatatgtat-gactttagaagtagttatgattaaagtcaaacatttttaatgat 39560388  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 452 - 501
Target Start/End: Complemental strand, 26819330 - 26819281
Alignment:
Q  452 gactttagaagtagttatgataaaagtcaaacatttttaatgatctaacg 501  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  26819330 gactttagaagtagttgcgataaaagtcaaacatttttaatgatctaacg 26819281  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 452 - 501
Target Start/End: Complemental strand, 29705942 - 29705893
Alignment:
Q  452 gactttagaagtagttatgataaaagtcaaacatttttaatgatctaacg 501  Q
    |||||||||||| ||||||||||||||||||| ||| ||||||| |||||    
T  29705942 gactttagaagtggttatgataaaagtcaaacgtttataatgatttaacg 29705893  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 455 - 493
Target Start/End: Original strand, 30011767 - 30011805
Alignment:
Q  455 tttagaagtagttatgataaaagtcaaacatttttaatg 493  Q
    ||||||||||||||||||  |||||||||||||||||||    
T  30011767 tttagaagtagttatgattgaagtcaaacatttttaatg 30011805  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 460 - 497
Target Start/End: Original strand, 3017486 - 3017523
Alignment:
Q  460 aagtagttatgataaaagtcaaacatttttaatgatct 497  Q
    ||||||||||||| |||||||||| |||||||||||||    
T  3017486 aagtagttatgattaaagtcaaacttttttaatgatct 3017523  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 452 - 497
Target Start/End: Complemental strand, 26762915 - 26762870
Alignment:
Q  452 gactttagaagtagttatgataaaagtcaaacatttttaatgatct 497  Q
    ||||||||||||| ||||||| |||||||||| |||||| ||||||    
T  26762915 gactttagaagtaattatgattaaagtcaaacgtttttactgatct 26762870  T

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Target: chr3 (Bit Score: 46; Significance: 7e-17; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 26 - 91
Target Start/End: Complemental strand, 2229777 - 2229712
Alignment:
Q  26 taggatcaccaccaagattcttcatggcatccctcatagaagccaaatcaacaagagcaggaactc 91  Q
    ||||||||||||||||||||||||| ||||| ||||||||||| | ||||| ||||||||||||||    
T  2229777 taggatcaccaccaagattcttcatagcatctctcatagaagcaagatcaaaaagagcaggaactc 2229712  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 199 - 241
Target Start/End: Complemental strand, 2229644 - 2229602
Alignment:
Q  199 ggaacaaacctgcaacagaacacgagcaggcatgaaaggaatt 241  Q
    |||||||||||||| ||||||| |||||||||||| |||||||    
T  2229644 ggaacaaacctgcaccagaacatgagcaggcatgagaggaatt 2229602  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 452 - 496
Target Start/End: Complemental strand, 31650351 - 31650307
Alignment:
Q  452 gactttagaagtagttatgataaaagtcaaacatttttaatgatc 496  Q
    ||||||||||||||||||||| |||||||||||||||||||||||    
T  31650351 gactttagaagtagttatgattaaagtcaaacatttttaatgatc 31650307  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 452 - 501
Target Start/End: Complemental strand, 733638 - 733589
Alignment:
Q  452 gactttagaagtagttatgataaaagtcaaacatttttaatgatctaacg 501  Q
    ||||||||||||||||| ||| ||||||  || |||||||||||||||||    
T  733638 gactttagaagtagttacgattaaagtcggacgtttttaatgatctaacg 733589  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 452 - 501
Target Start/End: Complemental strand, 35170021 - 35169972
Alignment:
Q  452 gactttagaagtagttatgataaaagtcaaacatttttaatgatctaacg 501  Q
    ||||||||||||||||||||| |||||||||||| |||||| ||||||||    
T  35170021 gactttagaagtagttatgattaaagtcaaacatctttaataatctaacg 35169972  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 451 - 497
Target Start/End: Complemental strand, 5376357 - 5376311
Alignment:
Q  451 cgactttagaagtagttatgataaaagtcaaacatttttaatgatct 497  Q
    |||||||||||||||||||||| | |||||||| |||||||||||||    
T  5376357 cgactttagaagtagttatgattacagtcaaacgtttttaatgatct 5376311  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000007; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 33 - 120
Target Start/End: Original strand, 40560964 - 40561051
Alignment:
Q  33 accaccaagattcttcatggcatccctcatagaagccaaatcaacaagagcaggaactccagtagcatccttgtcaacacaaccaaat 120  Q
    ||||| |||| ||||| ||| ||||||||||||||  | |||||||||| ||| || | ||||||||||||||||| ||| |||||||    
T  40560964 accacaaagaatcttcgtggaatccctcatagaagttacatcaacaagaacagaaaatgcagtagcatccttgtcagcactaccaaat 40561051  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 426 - 496
Target Start/End: Original strand, 16230762 - 16230827
Alignment:
Q  426 atcacaaccaatcatatatttatatcgactttagaagtagttatgataaaagtcaaacatttttaatgatc 496  Q
    ||||||||||||||||| |||     || |||||||||||||||||| ||||||||||||||| |||||||    
T  16230762 atcacaaccaatcatatgttt-----gattttagaagtagttatgattaaagtcaaacattttaaatgatc 16230827  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 451 - 500
Target Start/End: Complemental strand, 16962243 - 16962195
Alignment:
Q  451 cgactttagaagtagttatgataaaagtcaaacatttttaatgatctaac 500  Q
    ||||||||||| |||||||||| ||||||||||  |||||||||||||||    
T  16962243 cgactttagaaatagttatgattaaagtcaaac-gttttaatgatctaac 16962195  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 452 - 501
Target Start/End: Original strand, 36261995 - 36262044
Alignment:
Q  452 gactttagaagtagttatgataaaagtcaaacatttttaatgatctaacg 501  Q
    ||||||||||||||||||||| |||| ||||  |||||||||||| ||||    
T  36261995 gactttagaagtagttatgattaaagccaaatgtttttaatgatccaacg 36262044  T

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Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 206 - 291
Target Start/End: Original strand, 17043090 - 17043175
Alignment:
Q  206 acctgcaacagaacacgagcaggcatgaaaggaatttcagtttggttttgagaagtgttctcccaatcaataatattttcaacatc 291  Q
    |||||||| ||||||||||||||| |||| |||||||||  ||| ||   ||||||||| ||||| |||||||| || ||||||||    
T  17043090 acctgcaagagaacacgagcaggcttgaatggaatttcaacttgtttagtagaagtgttttcccagtcaataatcttctcaacatc 17043175  T

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Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 215 - 336
Target Start/End: Complemental strand, 37232888 - 37232767
Alignment:
Q  215 agaacacgagcaggcatgaaaggaatttcagtttggttttgagaagtgttctcccaatcaataatattttcaacatcattctgagtcactttgaagttgt 314  Q
    ||||||||||||||| ||||||| || |||  ||| |||  ||||||| | ||||| |||||||| |||||||||||    | ||| |||| ||| ||||    
T  37232888 agaacacgagcaggcttgaaagggatctcaacttgctttgcagaagtgctttcccagtcaataatcttttcaacatctgctttagtaacttggaaattgt 37232789  T
Q  315 cacaattacgtattgcagattc 336  Q
    |||||||||| || ||||||||    
T  37232788 cacaattacgaatggcagattc 37232767  T

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