View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3025_low_11 (Length: 464)
Name: NF3025_low_11
Description: NF3025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3025_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 433; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 6 - 450
Target Start/End: Complemental strand, 41847633 - 41847189
Alignment:
| Q |
6 |
agtagcaaagggggtgtggatagagatagtgatggaacaacaactgaaacagatagaagcaaattagtgttttttgatagaaggaatgagtttgagttag |
105 |
Q |
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|||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41847633 |
agtaacaatgggggtgtggatagagatagtgatggaacaacaactgaaacagatagaagcaaattagtgttttttgatagaaggaatgagtttgagttag |
41847534 |
T |
|
| Q |
106 |
aggatttgctacgagcttctgcagagatgcttgggaagggtagtttgggaactgtttatagagctgttcttgatgatggatgtactgttgctgttaagag |
205 |
Q |
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| T |
41847533 |
aggatttgctacgagcttctgcagagatgcttgggaagggtagtttgggaactgtttatagagctgttcttgatgatggatgtactgttgctgttaagag |
41847434 |
T |
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| Q |
206 |
acttaaggatgctaatccttgtgataggaatcagtttgaacagtatatggatgttgtggggaagcttagacatcctaatgttgttagacttaaagcttat |
305 |
Q |
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| T |
41847433 |
acttaaggatgctaatccttgtgataggaatcagtttgaacagtatatggatgttgtggggaagcttagacatcctaatgttgttagacttaaagcttat |
41847334 |
T |
|
| Q |
306 |
tattatgctaaggaagaaaagcttttggtttatgattatctttccaatggaagcttgcatgctcttcttcatggtttgtctaatctatttccctttacct |
405 |
Q |
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| T |
41847333 |
tattatgctaaggaagaaaagcttttggtttatgattatctttccaatggaagcttgcatgctcttcttcatggtttgtctaatctattgccctttacct |
41847234 |
T |
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| Q |
406 |
ttgagttttcaacttagtgatataattaataatactaattaattg |
450 |
Q |
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| T |
41847233 |
ttgagttttcaacttagtgatataattaataatactaattaattg |
41847189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 155; Significance: 4e-82; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 72 - 386
Target Start/End: Original strand, 26889516 - 26889830
Alignment:
| Q |
72 |
gtgttttttgatagaaggaatgagtttgagttagaggatttgctacgagcttctgcagagatgcttgggaagggtagtttgggaactgtttatagagctg |
171 |
Q |
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|||||||||||||| ||||||| |||||||| || |||||| | || || ||||| |||||||||||||||||||||||||||||||||||||| || | |
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| T |
26889516 |
gtgttttttgataggaggaatggatttgagttggaagatttgttgcgtgcatctgctgagatgcttgggaagggtagtttgggaactgtttatagggcag |
26889615 |
T |
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| Q |
172 |
ttcttgatgatggatgtactgttgctgttaagagacttaaggatgctaatccttgtgataggaatcagtttgaacagtatatggatgttgtggggaagct |
271 |
Q |
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| T |
26889616 |
tgcttgatgatggtagtacggttgctgtcaagaggcttaaagatgcaaatccttgtgctaggcatgaatttgaacagtatatggatgtgattgggaagct |
26889715 |
T |
|
| Q |
272 |
tagacatcctaatgttgttagacttaaagcttattattatgctaaggaagaaaagcttttggtttatgattatctttccaatggaagcttgcatgctctt |
371 |
Q |
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| T |
26889716 |
taaacaccctaacattgttaaacttagagcttattattatgccaaggaagaaaagcttcttgtctatgattatctctccaatgggagcttgcatgctctt |
26889815 |
T |
|
| Q |
372 |
cttcatggtttgtct |
386 |
Q |
| |
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|||||||||| |||| |
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| T |
26889816 |
cttcatggttagtct |
26889830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 206
Target Start/End: Original strand, 49732861 - 49732962
Alignment:
| Q |
105 |
gaggatttgctacgagcttctgcagagatgcttgggaagggtagtttgggaactgtttatagagctgttcttgatgatggatgtactgttgctgttaaga |
204 |
Q |
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||||||||| |||| ||||| || || ||| | ||||| ||| | || ||||||| ||||| ||||||||||||||||||| | ||||||||| |||| |
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| T |
49732861 |
gaggatttgttacgtgcttcagctgaaatgttagggaaaggtggatttggaactgcttataaagctgttcttgatgatggaaatgttgttgctgtgaaga |
49732960 |
T |
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| Q |
205 |
ga |
206 |
Q |
| |
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|| |
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| T |
49732961 |
ga |
49732962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 95 - 185
Target Start/End: Original strand, 22837638 - 22837728
Alignment:
| Q |
95 |
gtttgagttagaggatttgctacgagcttctgcagagatgcttgggaagggtagtttgggaactgtttatagagctgttcttgatgatgga |
185 |
Q |
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||||||| ||||||||||||| || ||||| || || ||| | |||||||||| || |||||||| |||| ||||||||||||||||||| |
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| T |
22837638 |
gtttgagctagaggatttgcttcgtgcttcggcggaaatgttggggaagggtaccttaggaactgtctataaagctgttcttgatgatgga |
22837728 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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