View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3025_low_12 (Length: 458)
Name: NF3025_low_12
Description: NF3025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3025_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 368; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 21 - 442
Target Start/End: Complemental strand, 4895253 - 4894831
Alignment:
| Q |
21 |
gcagccacacgtagttttttcactagatcgtttctggtcaagttgtaccccattcccatctgcnnnnnnnnn-tcgtttggactaattcgtgtaagtttt |
119 |
Q |
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| T |
4895253 |
gcagccacacgtagttttttcactagatcgtttctggtcaagttgtaccctattcccatctgcaaaaaaaaaatcgtttggactaattcgtgtaagtttt |
4895154 |
T |
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| Q |
120 |
tcatttctctaataatttaagggaaatagtacatgccttaattaatttctcaaatcaattcaaaatttggttgtgaaaaggaaaacaactatacatttat |
219 |
Q |
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| T |
4895153 |
tcatttctcaaataattcaagggaaatagtacatgccttaattaatttctcaaatcaattcaaaatttggttgtgaaaaggaaaacaactatacatttat |
4895054 |
T |
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| Q |
220 |
aacattgaaaaggacacaaagtacatttttaaatattgaaaaggacacaagaaggagaaaaaatcatcattatagtacccaattaaactgttaatctcta |
319 |
Q |
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| T |
4895053 |
aatattgaaaaggacacaaagtacatttttaaatattgaaaaggacacaagaaggagaaaaaatcatcattttagtacccaattaaactgttaatctcta |
4894954 |
T |
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| Q |
320 |
ttcaatttagttttaagttacaagttatattatactcatcaatttaaccatactattaaaatgttacgtaatctttaacatcttaacaacagaaagtcca |
419 |
Q |
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| T |
4894953 |
ttcaatttagttttaagttacaagttatattatactcatcaatttaaccatactattaaaatgttacgtaatctttaacatcttaacaacagaaagtcca |
4894854 |
T |
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| Q |
420 |
ctcaaatcattcaagtggttatt |
442 |
Q |
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| T |
4894853 |
ctcaaatcattcaagtggttatt |
4894831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 122 - 205
Target Start/End: Complemental strand, 4918377 - 4918294
Alignment:
| Q |
122 |
atttctctaataatttaagggaaatagtacatgccttaattaatttctcaaatcaattcaaaatttggttgtgaaaaggaaaac |
205 |
Q |
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| T |
4918377 |
atttctcaaataattaaagggaaacaacacatgcctaaatttatttctcaaaccaatttaaaaattggttgtgaaaatgaaaac |
4918294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 109 - 207
Target Start/End: Complemental strand, 4923698 - 4923604
Alignment:
| Q |
109 |
gtgtaagtttttcatttctctaataatttaagggaaatagta-catgccttaattaatttctcaaatcaattcaaaatttggttgtgaaaaggaaaacaa |
207 |
Q |
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| T |
4923698 |
gtgtaagtttctcatttctcaaataattaatgggaaatggtaacatgccttaattaa-----caaatcaattcaacgtttggtagtgaaaaggagaacaa |
4923604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 155 - 235
Target Start/End: Complemental strand, 4894726 - 4894645
Alignment:
| Q |
155 |
ccttaattaatttctcaaatcaattcaaaatttggttgtgaaaaggaaaacaactatacatttat-aacattgaaaaggaca |
235 |
Q |
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| T |
4894726 |
ccttaattaatttcacatatcaatttaaaatctgtttgtgaaaaggagaacaaggatacatttatgaagattgaaagggaca |
4894645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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