View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3025_low_13 (Length: 440)
Name: NF3025_low_13
Description: NF3025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3025_low_13 |
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| [»] scaffold0182 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 402; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 11 - 424
Target Start/End: Original strand, 36968831 - 36969244
Alignment:
| Q |
11 |
acatcatcagcgtgaaacgcgaattgattatgaatatgagcagcgaggacgatgatgataacagtgacgtcgttgataacggtgacgaagttgattatca |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36968831 |
acatcatcagcgtgaaacgcgaattgattatgaatatgagctgcgaggacgatgatgataacagtgacgtcgttgataacggtgacgaagttgattatca |
36968930 |
T |
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| Q |
111 |
aactagtaacggccgtcgagttctccgttctcgttacctcgccgtccagaacttgattcacggtggtaattcaattttattcaacactcattctgttttt |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
36968931 |
aactagtaacggccgtcgagttctccgttctcgttacctcgccgtccagaacttgattcgcggtggtaattcaattttattcaacactcattctgttttt |
36969030 |
T |
|
| Q |
211 |
tgattctgttacgagtttcatttttcttgcatgtttctatttctgtagagaatccagaaatgagaaaacgacttcaaattttgtgttattgctttcgttt |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36969031 |
tgattctgttacgagtttcatttttcttgcatgtttctatttctgtagagaatccagaaatgagaaaacgacttcaaattttgtgttattgctttcgttt |
36969130 |
T |
|
| Q |
311 |
atgtagtgtagattctatttttgatatcgattttctgtgtaacaaatgaactatatagtttagtgaagtaactgatttggtttggcgattgttcaaaatt |
410 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36969131 |
atgtagtttagattctatttttgatatcgattttctgtgtaacaaatgaactatatagtttagtgaagtaactgatttggtttggcgattgttcaaaatt |
36969230 |
T |
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| Q |
411 |
tattcacattatga |
424 |
Q |
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| T |
36969231 |
tattcacattatga |
36969244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 94 - 300
Target Start/End: Original strand, 21723501 - 21723715
Alignment:
| Q |
94 |
gacgaagttgattatcaaactagtaacggccgtcgagttctccgttctcgttacctcgccgtccagaacttgattcacggtggtaattcaattttattca |
193 |
Q |
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|||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||| ||||||||||| | |||||||||||||||| |
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| T |
21723501 |
gacgaagttgattatcaaactagtaacgaccgtcgagatctccgttctcgttaccgcgccgtccagaacatgattcacggtaggaattcaattttattca |
21723600 |
T |
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| Q |
194 |
acactcattctgttttttgattctgttacgagtttcat--------ttttcttgcatgtttctatttctgtagagaatccagaaatgagaaaacgacttc |
285 |
Q |
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| T |
21723601 |
acgctcattctgttttctaattctgtttcgagtttcatattatttatttttttgcatgtttttacttctgtagagaatccagaaatgagaaaacgacttc |
21723700 |
T |
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| Q |
286 |
aaattttgtgttatt |
300 |
Q |
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| T |
21723701 |
aaattttgtgttatt |
21723715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0182 (Bit Score: 134; Significance: 1e-69; HSPs: 1)
Name: scaffold0182
Description:
Target: scaffold0182; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 94 - 300
Target Start/End: Original strand, 32137 - 32351
Alignment:
| Q |
94 |
gacgaagttgattatcaaactagtaacggccgtcgagttctccgttctcgttacctcgccgtccagaacttgattcacggtggtaattcaattttattca |
193 |
Q |
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|||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||| ||||||||||| | |||||||||||||||| |
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| T |
32137 |
gacgaagttgattatcaaactagtaacgaccgtcgagatctccgttctcgttaccgcgccgtccagaacatgattcacggtaggaattcaattttattca |
32236 |
T |
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| Q |
194 |
acactcattctgttttttgattctgttacgagtttcat--------ttttcttgcatgtttctatttctgtagagaatccagaaatgagaaaacgacttc |
285 |
Q |
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|| ||||||||||||| | |||||||| |||||||||| |||| |||||||||| || ||||||||||||||||||||||||||||||||||| |
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| T |
32237 |
acgctcattctgttttctaattctgtttcgagtttcatattatttatttttttgcatgtttttacttctgtagagaatccagaaatgagaaaacgacttc |
32336 |
T |
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| Q |
286 |
aaattttgtgttatt |
300 |
Q |
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||||||||||||||| |
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| T |
32337 |
aaattttgtgttatt |
32351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 102; Significance: 2e-50; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 94 - 231
Target Start/End: Complemental strand, 13379425 - 13379288
Alignment:
| Q |
94 |
gacgaagttgattatcaaactagtaacggccgtcgagttctccgttctcgttacctcgccgtccagaacttgattcacggtggtaattcaattttattca |
193 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||| ||| |||||||||||||||||| |
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| T |
13379425 |
gacgaagttgattatcaaactagtaacggccgtcgagttctccgttctcgttatctcgctgtccagaacatgattcaaggtagtaattcaattttattca |
13379326 |
T |
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| Q |
194 |
acactcattctgttttttgattctgttacgagtttcat |
231 |
Q |
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|| |||||| |||||| | ||||||||||||||||||| |
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| T |
13379325 |
acgctcattatgttttctaattctgttacgagtttcat |
13379288 |
T |
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