View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3025_low_18 (Length: 325)
Name: NF3025_low_18
Description: NF3025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3025_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 19 - 311
Target Start/End: Original strand, 14379777 - 14380069
Alignment:
| Q |
19 |
gcagcaactatttgacgaacttctactaattagagttttggtaaatttacaactcaacaaacttcggatgcgagaaataaaatcaacctacataaccaaa |
118 |
Q |
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| T |
14379777 |
gcagcaactatttgaccaacttctactaattagagttttggtcaatttacaactcaacaaacttcggatgcgagaaataaaatcaacctatataaccaaa |
14379876 |
T |
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| Q |
119 |
catgacattacttgctctttgccaggggcaatatgcaacaagtacgacactaatgcacaaacataaatggcgcaaacctcataattgttgtagtcaaggt |
218 |
Q |
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| T |
14379877 |
catgacattacttgctctttgccaggggcaatatgcaacaagtacgacactaatgcacaaacataaatggcgcaaacctcataattgttgtagtcaaggt |
14379976 |
T |
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| Q |
219 |
gagtaagaaaacccaacccattagaggttcatgattcccacaaatagcattgacaattgaatcaccagtcacaattaagctctagcaagaggt |
311 |
Q |
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| T |
14379977 |
gagtaagaaaactcaacccattagaggttcatgattcccacaaatagcattgacaattgaatcaccagtcacaattaagctctagcaagaggt |
14380069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 22 - 316
Target Start/End: Complemental strand, 14246463 - 14246168
Alignment:
| Q |
22 |
gcaactatttgacgaacttctactaattagagttttggtaaatttacaactcaacaaacttcgg-atgcgagaaataaaatcaacctacataaccaaaca |
120 |
Q |
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| T |
14246463 |
gcaactatttgatctacttctattaattagagttttggagaatttacagctcagcggacattggcacacgaaaaatacaatcaactcacataaccaaaca |
14246364 |
T |
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| Q |
121 |
tgacattacttgctctttgccaggggcaatatgcaacaagtacgacactaatgcacaaacataaatggcgcaaacctcataattgttgtagtcaaggtga |
220 |
Q |
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| T |
14246363 |
tgacattacgtgctctttgctaggagaaatatgcaacaagaacgacactgatgcacaaacataaatggggcaaacatcgtaattgtcgtattcaaggtga |
14246264 |
T |
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| Q |
221 |
gtaagaaaacccaacccattagaggttcatgattcccacaaatagcattgacaattgaatcaccagtcacaattaagctctagcaagaggtgatga |
316 |
Q |
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| T |
14246263 |
gtaagaaaactcaacccattacgggttcatgattcccacaaatagcattgacaattgaatcaccagtcacaattgagctctggcgagaggtaatga |
14246168 |
T |
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