View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3025_low_2 (Length: 659)
Name: NF3025_low_2
Description: NF3025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3025_low_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 536; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 536; E-Value: 0
Query Start/End: Original strand, 18 - 644
Target Start/End: Complemental strand, 35906023 - 35905397
Alignment:
| Q |
18 |
atctttacggtgcttccaccggtattacaaatcaagctgctaaggatgttaaaattgattatcaaactatgcctcaatacattgctcctcatgatgttta |
117 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35906023 |
atctttacggtgcttccactggtattacaaatcaagctgctaaggatgttaaaattgattatcaaactatgcctcaatacattgctcctcatgatgttta |
35905924 |
T |
|
| Q |
118 |
ttcaacatcaagatcaatgggaaataataaagatgtcaacatgggatacaatctcacatggatgtttcaagttgatccgaattcaatgtacttaaccagg |
217 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35905923 |
ttcaacgtcaagatcaatgggaaataataaagatgtcaacatgggatacaatctcacatggatgtttcaagttgatccgaattcaatgtacttaaccagg |
35905824 |
T |
|
| Q |
218 |
ttgcatttttgtgattacttttattctaaagttaatgaaattgttttcaatgtctttgtcaacaatcaaacggcgcagactggggcggatgttattggtt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35905823 |
ttgcatttttgtgattacttttattctaaagttaatgagattgttttcaatgtctttgtcaacaatcaaacggcgcagactggggcggatgttattggtt |
35905724 |
T |
|
| Q |
318 |
ggacaggcggtaaaggagtgcctacttataaggattatgtgatttatgttcaagatcaggcaggtgatgatcaactttggcttgcattgcatccatcgcc |
417 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35905723 |
ggacaggcagtaaaggagtgcctacttataaggattatgtgatttatgttcaagatcaggcaggtgatgatcaactttggcttgcattgcatccatcgcc |
35905624 |
T |
|
| Q |
418 |
cgattcaaagccggaatattatgatgctatactcaatggtgttgagatattcaaactcaatgatactgatttgtctggaccaaatcctcaaccttctgat |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35905623 |
cgattcaaagccggaatattatgatgctatactcaatggtgttgagatattcaaactcaatgatactgatttgtctggaccaaatcctcaaccttctgat |
35905524 |
T |
|
| Q |
518 |
atgatgattgaacatgacaatcaggnnnnnnnnnnnnnnnnnnnnnnnnntggtcataataagagttttgttattggtggtgctgccggtggtgcggcag |
617 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35905523 |
atgatgattgaacatgacaatcaggaaaaaacttttcaaaacaaaaaaaatggtcataataagagttttgttattggtggtgctgccggtggtgcggcag |
35905424 |
T |
|
| Q |
618 |
gttttgcaattgttgctgctatatgtg |
644 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
35905423 |
gttttgcaattgttgctgctatatgtg |
35905397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 77; Significance: 2e-35; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 77 - 513
Target Start/End: Original strand, 47623464 - 47623900
Alignment:
| Q |
77 |
tatcaaactatgcctcaatacattgctcctcatgatgtttattcaacatcaagatcaatgggaaataataaagatgtcaacatgggatacaatctcacat |
176 |
Q |
| |
|
||||| |||||||| | |||||||| |||| | ||| || || ||||||||||||||||| | |||| || ||||||||||||||||| ||||| | |
|
|
| T |
47623464 |
tatcagactatgccaaagtacattgcacctcctactgtctactccacatcaagatcaatgggtaccgataaggacgtcaacatgggatacaacctcacgt |
47623563 |
T |
|
| Q |
177 |
ggatgtttcaagttgatccgaattcaatgtacttaaccaggttgcatttttgtgattacttttattctaaagttaatgaaattgttttcaatgtctttgt |
276 |
Q |
| |
|
|| | || ||||||||||| ||||| |||||| | ||||||||||| ||||||| || |||||| || || ||||| |||||||||||| | ||| | |
|
|
| T |
47623564 |
gggttttccaagttgatccaaattccatgtacctcgtgaggttgcatttctgtgatttctattattccaaggtcaatgagattgttttcaatatatttct |
47623663 |
T |
|
| Q |
277 |
caacaatcaaacggcgcagactggggcggatgttattggttggacaggcggtaaaggagtgcctacttataaggattatgtgatttatgttcaagatcag |
376 |
Q |
| |
|
||| || | ||||| ||| || || ||| ||||||| |||||||| |||||||| || | ||||| |||| |||||| | ||||| ||||| | |
|
|
| T |
47623664 |
caataacaatacggcacaggctcaagctgatattattgggtggacaggaggtaaaggcatgacaacttaccaggactatgtggtatatgtccaagacggg |
47623763 |
T |
|
| Q |
377 |
gcaggtgatgatcaactttggcttgcattgcatccatcgcccgattcaaagccggaatattatgatgctatactcaatggtgttgagatattcaaactca |
476 |
Q |
| |
|
| || ||||| ||||||||||||||| | |||||| | || || ||||| || | | |||||||||||||||||||| || ||||||||||| |||| |
|
|
| T |
47623764 |
gagggggatgagcaactttggcttgcactacatccagcacctgactcaaaaccacagttctatgatgctatactcaatggggtggagatattcaagctca |
47623863 |
T |
|
| Q |
477 |
atgatactgatttgtctggaccaaatcctcaaccttc |
513 |
Q |
| |
|
|||| || || |||||||| || |||||||| ||||| |
|
|
| T |
47623864 |
atgacacggacttgtctggccccaatcctcagccttc |
47623900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University